Variant report

Variant	rs11946018
Chromosome Location	chr4:160372957-160372958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10011640	1.00[EUR][1000 genomes]
rs11100220	1.00[EUR][1000 genomes]
rs1317334	1.00[EUR][1000 genomes]
rs1502741	1.00[EUR][1000 genomes]
rs17038266	1.00[EUR][1000 genomes]
rs17038473	1.00[EUR][1000 genomes]
rs17038509	1.00[EUR][1000 genomes]
rs17038521	1.00[EUR][1000 genomes]
rs1881754	1.00[EUR][1000 genomes]
rs28463255	1.00[EUR][1000 genomes]
rs28628113	1.00[EUR][1000 genomes]
rs28728335	1.00[EUR][1000 genomes]
rs28757609	1.00[EUR][1000 genomes]
rs28848564	1.00[EUR][1000 genomes]
rs3897680	1.00[EUR][1000 genomes]
rs56098314	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6813172	1.00[EUR][1000 genomes]
rs6818489	1.00[EUR][1000 genomes]
rs6834258	1.00[EUR][1000 genomes]
rs6844487	1.00[EUR][1000 genomes]
rs72971811	1.00[EUR][1000 genomes]
rs72971815	1.00[EUR][1000 genomes]
rs7658755	1.00[EUR][1000 genomes]
rs7659664	1.00[EUR][1000 genomes]
rs7660063	1.00[EUR][1000 genomes]
rs7660599	1.00[EUR][1000 genomes]
rs7678896	1.00[EUR][1000 genomes]
rs7679524	1.00[EUR][1000 genomes]
rs9995168	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028244	chr4:160370159-160395135	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160368200-160376600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:160368400-160390200	Weak transcription	NHEK	skin
3	chr4:160372400-160373800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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