Variant report

Variant	rs28757609
Chromosome Location	chr4:160259209-160259210
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10011640	1.00[EUR][1000 genomes]
rs11100220	1.00[EUR][1000 genomes]
rs11946018	1.00[EUR][1000 genomes]
rs1317334	1.00[EUR][1000 genomes]
rs17038266	1.00[EUR][1000 genomes]
rs1881754	1.00[EUR][1000 genomes]
rs28463255	1.00[EUR][1000 genomes]
rs28628113	1.00[EUR][1000 genomes]
rs28728335	1.00[EUR][1000 genomes]
rs3897680	1.00[EUR][1000 genomes]
rs6818489	1.00[EUR][1000 genomes]
rs72971811	1.00[EUR][1000 genomes]
rs72971815	1.00[EUR][1000 genomes]
rs7659664	1.00[EUR][1000 genomes]
rs7660063	1.00[EUR][1000 genomes]
rs7660599	1.00[EUR][1000 genomes]
rs7679524	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160205800-160260600	Weak transcription	Aorta	Aorta
2	chr4:160217000-160259400	Weak transcription	Fetal Brain Male	brain
3	chr4:160223000-160260000	Weak transcription	Ovary	ovary
4	chr4:160224600-160262400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:160225200-160260200	Weak transcription	Thymus	Thymus
6	chr4:160226000-160260800	Weak transcription	Colonic Mucosa	Colon
7	chr4:160226200-160270600	Weak transcription	Small Intestine	intestine
8	chr4:160230200-160263800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:160230200-160270800	Weak transcription	A549	lung
10	chr4:160230400-160259400	Weak transcription	NHLF	lung
11	chr4:160230400-160260200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:160230400-160260600	Weak transcription	HSMMtube	muscle
13	chr4:160230600-160260000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:160231000-160259400	Weak transcription	HMEC	breast
15	chr4:160231000-160260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:160231000-160260400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:160232200-160274600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:160233000-160260000	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:160233600-160259600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:160233800-160264000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr4:160234000-160259400	Weak transcription	Esophagus	oesophagus
22	chr4:160234200-160260200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:160235200-160266200	Weak transcription	Spleen	Spleen
24	chr4:160236000-160259400	Weak transcription	Brain Angular Gyrus	brain
25	chr4:160236800-160260200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr4:160237000-160279400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:160237000-160284400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr4:160237400-160266200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:160237400-160274600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:160237600-160260000	Weak transcription	Fetal Thymus	thymus
31	chr4:160238200-160260000	Weak transcription	Fetal Brain Female	brain
32	chr4:160238600-160260200	Weak transcription	Pancreas	Pancrea
33	chr4:160238600-160263800	Weak transcription	Fetal Stomach	stomach
34	chr4:160238600-160263800	Weak transcription	Lung	lung
35	chr4:160238600-160282200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:160240600-160260200	Weak transcription	Gastric	stomach
37	chr4:160241000-160281600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr4:160243000-160262400	Weak transcription	K562	blood
39	chr4:160244600-160259400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr4:160244600-160259400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:160244800-160259600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr4:160244800-160260000	Weak transcription	Brain Germinal Matrix	brain
43	chr4:160244800-160260600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr4:160245000-160259400	Weak transcription	Right Ventricle	heart
45	chr4:160245000-160260000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr4:160245600-160260200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr4:160249600-160274000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr4:160250000-160283400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr4:160250000-160284400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:160250400-160285200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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