Variant report

Variant	rs1317334
Chromosome Location	chr4:160427124-160427125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160424643..160427469-chr4:160428460..160430734,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10011640	1.00[EUR][1000 genomes]
rs10018686	1.00[EUR][1000 genomes]
rs10024533	1.00[EUR][1000 genomes]
rs10025094	1.00[EUR][1000 genomes]
rs11100220	1.00[EUR][1000 genomes]
rs11946018	1.00[EUR][1000 genomes]
rs1502741	1.00[EUR][1000 genomes]
rs17038266	1.00[EUR][1000 genomes]
rs17038473	1.00[EUR][1000 genomes]
rs17038509	1.00[EUR][1000 genomes]
rs17038521	1.00[EUR][1000 genomes]
rs1881754	1.00[EUR][1000 genomes]
rs28463255	1.00[EUR][1000 genomes]
rs28628113	1.00[EUR][1000 genomes]
rs28728335	1.00[EUR][1000 genomes]
rs28757609	1.00[EUR][1000 genomes]
rs28848564	1.00[EUR][1000 genomes]
rs3897680	1.00[EUR][1000 genomes]
rs6813172	1.00[EUR][1000 genomes]
rs6818111	1.00[EUR][1000 genomes]
rs6818489	1.00[EUR][1000 genomes]
rs6834258	1.00[EUR][1000 genomes]
rs6844487	1.00[EUR][1000 genomes]
rs72971811	1.00[EUR][1000 genomes]
rs72971815	1.00[EUR][1000 genomes]
rs7658685	1.00[EUR][1000 genomes]
rs7658755	1.00[EUR][1000 genomes]
rs7659664	1.00[EUR][1000 genomes]
rs7660063	1.00[EUR][1000 genomes]
rs7660599	1.00[EUR][1000 genomes]
rs7662613	1.00[EUR][1000 genomes]
rs7678896	1.00[EUR][1000 genomes]
rs7679524	1.00[EUR][1000 genomes]
rs9995168	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160414400-160430400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160424000-160427200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:160424800-160427200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:160424800-160427600	Enhancers	Fetal Brain Male	brain
5	chr4:160424800-160427800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:160425000-160427200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:160425000-160427400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:160425000-160427400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:160425000-160428000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:160425400-160427200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:160425600-160427600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr4:160426000-160430400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:160426200-160427600	Enhancers	Brain Germinal Matrix	brain
14	chr4:160426200-160428400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:160426400-160427200	Enhancers	HUVEC	blood vessel
16	chr4:160426600-160427200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:160426800-160427400	Enhancers	Liver	Liver
18	chr4:160426800-160427600	Enhancers	HSMM	muscle
19	chr4:160427000-160427200	Enhancers	NH-A	brain
20	chr4:160427000-160427400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:160427000-160427600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:160427000-160430400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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