Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10011640	1.00[EUR][1000 genomes]
rs10018686	1.00[EUR][1000 genomes]
rs10024533	1.00[EUR][1000 genomes]
rs10025094	1.00[EUR][1000 genomes]
rs11946018	1.00[EUR][1000 genomes]
rs1317334	1.00[EUR][1000 genomes]
rs1502741	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038266	1.00[EUR][1000 genomes]
rs17038473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28463255	1.00[EUR][1000 genomes]
rs28628113	1.00[EUR][1000 genomes]
rs28728335	1.00[EUR][1000 genomes]
rs28848564	1.00[EUR][1000 genomes]
rs3897680	1.00[EUR][1000 genomes]
rs6813172	1.00[EUR][1000 genomes]
rs6818111	1.00[EUR][1000 genomes]
rs6818489	1.00[EUR][1000 genomes]
rs6834258	1.00[EUR][1000 genomes]
rs6844487	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72971811	1.00[EUR][1000 genomes]
rs72971815	1.00[EUR][1000 genomes]
rs7658685	1.00[EUR][1000 genomes]
rs7659664	1.00[EUR][1000 genomes]
rs7660063	1.00[EUR][1000 genomes]
rs7660599	1.00[EUR][1000 genomes]
rs7662613	1.00[EUR][1000 genomes]
rs7678896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7679524	1.00[EUR][1000 genomes]
rs9995168	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160508600-160526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160516200-160526800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:160516800-160520000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:160516800-160530000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:160518600-160519800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:160518800-160519600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:160518800-160519600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:160518800-160520000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:160519200-160519600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:160519200-160519600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:160519200-160519800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr4:160519200-160520000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:160519200-160520400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:160519200-160521400	Active TSS	Fetal Kidney	kidney
15	chr4:160519400-160519600	Enhancers	H9 Cell Line	embryonic stem cell

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