Variant report

Variant	rs28463255
Chromosome Location	chr4:160407236-160407237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160405177..160408630-chr4:160643486..160645683,3	MCF-7	breast:
2	chr4:160406246..160408191-chr4:160408673..160410759,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10011640	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018686	1.00[EUR][1000 genomes]
rs10024533	1.00[EUR][1000 genomes]
rs10025094	1.00[EUR][1000 genomes]
rs11100220	1.00[EUR][1000 genomes]
rs11946018	1.00[EUR][1000 genomes]
rs1317334	1.00[EUR][1000 genomes]
rs1502741	1.00[EUR][1000 genomes]
rs17038266	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038473	1.00[EUR][1000 genomes]
rs17038509	1.00[EUR][1000 genomes]
rs17038521	1.00[EUR][1000 genomes]
rs1881754	1.00[EUR][1000 genomes]
rs28628113	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28728335	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28757609	1.00[EUR][1000 genomes]
rs28848564	1.00[EUR][1000 genomes]
rs3897680	1.00[EUR][1000 genomes]
rs6813172	1.00[EUR][1000 genomes]
rs6818111	1.00[EUR][1000 genomes]
rs6818489	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6834258	1.00[EUR][1000 genomes]
rs6844487	1.00[EUR][1000 genomes]
rs72971811	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72971815	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7658685	1.00[EUR][1000 genomes]
rs7658755	1.00[EUR][1000 genomes]
rs7659664	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7660063	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7660599	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7662613	1.00[EUR][1000 genomes]
rs7678896	1.00[EUR][1000 genomes]
rs7679524	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9995168	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160405000-160408200	Weak transcription	Fetal Brain Female	brain
2	chr4:160405200-160408800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:160405800-160408600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:160405800-160408600	Weak transcription	HSMMtube	muscle
5	chr4:160405800-160408800	Enhancers	HSMM	muscle
6	chr4:160406000-160408600	Weak transcription	Fetal Heart	heart
7	chr4:160406000-160408600	Weak transcription	NHEK	skin
8	chr4:160406200-160412800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:160407000-160408200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:160407000-160408200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:160407000-160408600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:160407000-160408600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:160407000-160408600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:160407000-160408600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:160407000-160408600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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