Variant report
| Variant | rs10024533 |
|---|---|
| Chromosome Location | chr4:160579205-160579206 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10018686 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10025094 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1317334 | 1.00[EUR][1000 genomes] |
| rs1502741 | 1.00[EUR][1000 genomes] |
| rs17038266 | 1.00[EUR][1000 genomes] |
| rs17038473 | 1.00[EUR][1000 genomes] |
| rs17038509 | 1.00[EUR][1000 genomes] |
| rs17038521 | 1.00[EUR][1000 genomes] |
| rs28463255 | 1.00[EUR][1000 genomes] |
| rs28628113 | 1.00[EUR][1000 genomes] |
| rs28728335 | 1.00[EUR][1000 genomes] |
| rs28848564 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6813172 | 1.00[EUR][1000 genomes] |
| rs6818111 | 1.00[EUR][1000 genomes] |
| rs6834258 | 1.00[EUR][1000 genomes] |
| rs6844487 | 1.00[EUR][1000 genomes] |
| rs72971811 | 1.00[EUR][1000 genomes] |
| rs72971815 | 1.00[EUR][1000 genomes] |
| rs7658685 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7658755 | 1.00[EUR][1000 genomes] |
| rs7659664 | 1.00[EUR][1000 genomes] |
| rs7660063 | 1.00[EUR][1000 genomes] |
| rs7660599 | 1.00[EUR][1000 genomes] |
| rs7662613 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7678896 | 1.00[EUR][1000 genomes] |
| rs7679524 | 1.00[EUR][1000 genomes] |
| rs9995168 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015469 | chr4:160389277-160841619 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv537316 | chr4:160389277-160841619 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv881205 | chr4:160516090-160628006 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | esv2755953 | chr4:160557413-160626250 | Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv595813 | chr4:160574450-160665365 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:160576600-160582200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr4:160578000-160584600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
