Variant report
| Variant | rs10018984 |
|---|---|
| Chromosome Location | chr4:82169678-82169679 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:82165201..82167303-chr4:82169084..82171721,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs10000303 | 1.00[EUR][1000 genomes] |
| rs10014824 | 1.00[EUR][1000 genomes] |
| rs10022306 | 1.00[EUR][1000 genomes] |
| rs10023642 | 1.00[EUR][1000 genomes] |
| rs10027298 | 1.00[EUR][1000 genomes] |
| rs10028912 | 1.00[EUR][1000 genomes] |
| rs10029494 | 1.00[EUR][1000 genomes] |
| rs10031760 | 1.00[EUR][1000 genomes] |
| rs13434668 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17005064 | 1.00[EUR][1000 genomes] |
| rs17005067 | 1.00[EUR][1000 genomes] |
| rs17005089 | 1.00[EUR][1000 genomes] |
| rs17005100 | 1.00[EUR][1000 genomes] |
| rs17005101 | 1.00[EUR][1000 genomes] |
| rs28377778 | 1.00[EUR][1000 genomes] |
| rs28539711 | 1.00[EUR][1000 genomes] |
| rs28550356 | 1.00[EUR][1000 genomes] |
| rs28550971 | 1.00[EUR][1000 genomes] |
| rs28625925 | 1.00[EUR][1000 genomes] |
| rs28664024 | 1.00[EUR][1000 genomes] |
| rs28665590 | 1.00[EUR][1000 genomes] |
| rs28669336 | 1.00[EUR][1000 genomes] |
| rs28727457 | 1.00[EUR][1000 genomes] |
| rs28810974 | 1.00[EUR][1000 genomes] |
| rs28860889 | 1.00[EUR][1000 genomes] |
| rs28882451 | 1.00[EUR][1000 genomes] |
| rs28888497 | 1.00[EUR][1000 genomes] |
| rs4496577 | 1.00[EUR][1000 genomes] |
| rs56236182 | 1.00[EUR][1000 genomes] |
| rs56347774 | 1.00[EUR][1000 genomes] |
| rs58295714 | 1.00[EUR][1000 genomes] |
| rs60390550 | 1.00[EUR][1000 genomes] |
| rs61676707 | 1.00[EUR][1000 genomes] |
| rs6814849 | 1.00[EUR][1000 genomes] |
| rs6828846 | 1.00[EUR][1000 genomes] |
| rs6837264 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6850833 | 1.00[EUR][1000 genomes] |
| rs73829535 | 1.00[EUR][1000 genomes] |
| rs73829539 | 1.00[EUR][1000 genomes] |
| rs73829540 | 1.00[EUR][1000 genomes] |
| rs73831298 | 1.00[EUR][1000 genomes] |
| rs7655473 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999729 | chr4:81802554-82627820 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv537156 | chr4:81802554-82627820 | Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:82169000-82169800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 2 | chr4:82169200-82170000 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
