Variant report

Variant	rs17005089
Chromosome Location	chr4:82119271-82119272
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10000303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10014824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018984	1.00[EUR][1000 genomes]
rs10022306	1.00[EUR][1000 genomes]
rs10023642	1.00[EUR][1000 genomes]
rs10027298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10028912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10029494	1.00[EUR][1000 genomes]
rs10031760	1.00[EUR][1000 genomes]
rs13434668	1.00[EUR][1000 genomes]
rs17005064	1.00[EUR][1000 genomes]
rs17005067	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17005100	1.00[EUR][1000 genomes]
rs17005101	1.00[EUR][1000 genomes]
rs28377778	1.00[EUR][1000 genomes]
rs28539711	1.00[EUR][1000 genomes]
rs28550356	1.00[EUR][1000 genomes]
rs28550971	1.00[EUR][1000 genomes]
rs28625925	1.00[EUR][1000 genomes]
rs28664024	1.00[EUR][1000 genomes]
rs28665590	1.00[EUR][1000 genomes]
rs28669336	1.00[EUR][1000 genomes]
rs28727457	1.00[EUR][1000 genomes]
rs28810974	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28860889	1.00[EUR][1000 genomes]
rs28882451	1.00[EUR][1000 genomes]
rs28888497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4496577	1.00[EUR][1000 genomes]
rs56236182	1.00[EUR][1000 genomes]
rs56347774	1.00[EUR][1000 genomes]
rs58295714	1.00[EUR][1000 genomes]
rs60390550	1.00[EUR][1000 genomes]
rs61676707	1.00[EUR][1000 genomes]
rs6814849	1.00[EUR][1000 genomes]
rs6828846	1.00[EUR][1000 genomes]
rs6837264	1.00[EUR][1000 genomes]
rs6850833	1.00[EUR][1000 genomes]
rs73829535	1.00[EUR][1000 genomes]
rs73829539	1.00[EUR][1000 genomes]
rs73829540	1.00[EUR][1000 genomes]
rs73831298	1.00[EUR][1000 genomes]
rs7655473	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82116000-82121000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:82116200-82120200	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:82116200-82121200	Weak transcription	NHLF	lung
4	chr4:82116600-82120000	Genic enhancers	Fetal Intestine Small	intestine
5	chr4:82117000-82120200	Genic enhancers	Fetal Intestine Large	intestine
6	chr4:82117400-82121000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:82117600-82120400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:82117600-82121200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:82118000-82119600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:82118400-82119800	Enhancers	Colon Smooth Muscle	Colon
11	chr4:82118600-82121200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:82118800-82119600	Enhancers	Stomach Smooth Muscle	stomach
13	chr4:82119000-82119600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:82119200-82119600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:82119200-82119800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:82119200-82119800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:82119200-82120000	Enhancers	Fetal Heart	heart
18	chr4:82119200-82120000	Enhancers	NHDF-Ad	bronchial

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