Variant report

Variant	rs60390550
Chromosome Location	chr4:82002688-82002689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10000303	1.00[EUR][1000 genomes]
rs10014824	1.00[EUR][1000 genomes]
rs10018984	1.00[EUR][1000 genomes]
rs10022306	1.00[EUR][1000 genomes]
rs10023642	1.00[EUR][1000 genomes]
rs10027298	1.00[EUR][1000 genomes]
rs10028912	1.00[EUR][1000 genomes]
rs10029494	1.00[EUR][1000 genomes]
rs10031760	1.00[EUR][1000 genomes]
rs13434668	1.00[EUR][1000 genomes]
rs17005064	1.00[EUR][1000 genomes]
rs17005067	1.00[EUR][1000 genomes]
rs17005089	1.00[EUR][1000 genomes]
rs17005100	1.00[EUR][1000 genomes]
rs17005101	1.00[EUR][1000 genomes]
rs28377778	1.00[EUR][1000 genomes]
rs28539711	1.00[EUR][1000 genomes]
rs28550356	1.00[EUR][1000 genomes]
rs28550971	1.00[EUR][1000 genomes]
rs28625925	1.00[EUR][1000 genomes]
rs28664024	1.00[EUR][1000 genomes]
rs28665590	1.00[EUR][1000 genomes]
rs28669336	1.00[EUR][1000 genomes]
rs28727457	1.00[EUR][1000 genomes]
rs28810974	1.00[EUR][1000 genomes]
rs28860889	1.00[EUR][1000 genomes]
rs28882451	1.00[EUR][1000 genomes]
rs28888497	1.00[EUR][1000 genomes]
rs4496577	1.00[EUR][1000 genomes]
rs56236182	1.00[EUR][1000 genomes]
rs56347774	1.00[EUR][1000 genomes]
rs58295714	1.00[EUR][1000 genomes]
rs61676707	1.00[EUR][1000 genomes]
rs6814849	1.00[EUR][1000 genomes]
rs6828846	1.00[EUR][1000 genomes]
rs6837264	1.00[EUR][1000 genomes]
rs6850833	1.00[EUR][1000 genomes]
rs73829535	1.00[EUR][1000 genomes]
rs73829539	1.00[EUR][1000 genomes]
rs73829540	1.00[EUR][1000 genomes]
rs73831298	1.00[EUR][1000 genomes]
rs7655473	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829984	chr4:81979988-82113977	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81998200-82030000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:82002600-82005400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links