Variant report

Variant	rs17005101
Chromosome Location	chr4:82211394-82211395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:82209550..82211788-chr4:82211978..82214225,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10000303	1.00[EUR][1000 genomes]
rs10014824	1.00[EUR][1000 genomes]
rs10018984	1.00[EUR][1000 genomes]
rs10022306	1.00[EUR][1000 genomes]
rs10023642	1.00[EUR][1000 genomes]
rs10027298	1.00[EUR][1000 genomes]
rs10028912	1.00[EUR][1000 genomes]
rs10029494	1.00[EUR][1000 genomes]
rs10031760	1.00[EUR][1000 genomes]
rs13434668	1.00[EUR][1000 genomes]
rs17005064	1.00[EUR][1000 genomes]
rs17005067	1.00[EUR][1000 genomes]
rs17005089	1.00[EUR][1000 genomes]
rs17005100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28377778	1.00[EUR][1000 genomes]
rs28539711	1.00[EUR][1000 genomes]
rs28550356	1.00[EUR][1000 genomes]
rs28550971	1.00[EUR][1000 genomes]
rs28625925	1.00[EUR][1000 genomes]
rs28664024	1.00[EUR][1000 genomes]
rs28665590	1.00[EUR][1000 genomes]
rs28669336	1.00[EUR][1000 genomes]
rs28727457	1.00[EUR][1000 genomes]
rs28810974	1.00[EUR][1000 genomes]
rs28860889	1.00[EUR][1000 genomes]
rs28882451	1.00[EUR][1000 genomes]
rs28888497	1.00[EUR][1000 genomes]
rs4496577	1.00[EUR][1000 genomes]
rs56236182	1.00[EUR][1000 genomes]
rs56347774	1.00[EUR][1000 genomes]
rs58295714	1.00[EUR][1000 genomes]
rs60390550	1.00[EUR][1000 genomes]
rs61676707	1.00[EUR][1000 genomes]
rs6814849	1.00[EUR][1000 genomes]
rs6828846	1.00[EUR][1000 genomes]
rs6837264	1.00[EUR][1000 genomes]
rs6850833	1.00[EUR][1000 genomes]
rs73829535	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829539	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829540	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831298	1.00[EUR][1000 genomes]
rs7655473	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82210600-82214200	Enhancers	Fetal Intestine Large	intestine
2	chr4:82211000-82215000	Enhancers	Fetal Intestine Small	intestine
3	chr4:82211200-82211400	Enhancers	Fetal Kidney	kidney

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