Variant report

Variant	rs17005067
Chromosome Location	chr4:82083773-82083774
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:82073740..82075498-chr4:82082583..82084834,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138669	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10000303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10014824	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018984	1.00[EUR][1000 genomes]
rs10022306	1.00[EUR][1000 genomes]
rs10023642	1.00[EUR][1000 genomes]
rs10027298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10028912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10029494	1.00[EUR][1000 genomes]
rs10031760	1.00[EUR][1000 genomes]
rs13434668	1.00[EUR][1000 genomes]
rs17005064	1.00[EUR][1000 genomes]
rs17005089	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17005100	1.00[EUR][1000 genomes]
rs17005101	1.00[EUR][1000 genomes]
rs28377778	1.00[EUR][1000 genomes]
rs28539711	1.00[EUR][1000 genomes]
rs28550356	1.00[EUR][1000 genomes]
rs28550971	1.00[EUR][1000 genomes]
rs28625925	1.00[EUR][1000 genomes]
rs28664024	1.00[EUR][1000 genomes]
rs28665590	1.00[EUR][1000 genomes]
rs28669336	1.00[EUR][1000 genomes]
rs28727457	1.00[EUR][1000 genomes]
rs28810974	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28860889	1.00[EUR][1000 genomes]
rs28882451	1.00[EUR][1000 genomes]
rs28888497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4496577	1.00[EUR][1000 genomes]
rs56236182	1.00[EUR][1000 genomes]
rs56347774	1.00[EUR][1000 genomes]
rs58295714	1.00[EUR][1000 genomes]
rs60390550	1.00[EUR][1000 genomes]
rs61676707	1.00[EUR][1000 genomes]
rs6814849	1.00[EUR][1000 genomes]
rs6828846	1.00[EUR][1000 genomes]
rs6837264	1.00[EUR][1000 genomes]
rs6850833	1.00[EUR][1000 genomes]
rs73829535	1.00[EUR][1000 genomes]
rs73829539	1.00[EUR][1000 genomes]
rs73829540	1.00[EUR][1000 genomes]
rs73831298	1.00[EUR][1000 genomes]
rs7655473	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829984	chr4:81979988-82113977	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv1822437	chr4:82025743-82118996	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82071000-82085400	Weak transcription	NHDF-Ad	bronchial
2	chr4:82075200-82085400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:82075400-82085800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:82079200-82085400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:82081200-82087200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:82082800-82087200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:82083400-82084200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:82083600-82084400	Enhancers	Dnd41	blood
9	chr4:82083600-82084600	Genic enhancers	Fetal Intestine Large	intestine

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