Variant report

Variant	rs10025670
Chromosome Location	chr4:45448314-45448315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12507421	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12644052	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16858552	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1872707	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349126	0.92[EUR][1000 genomes]
rs4308401	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4320171	0.92[EUR][1000 genomes]
rs4345223	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4356942	0.97[EUR][1000 genomes]
rs4359946	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4434289	0.97[EUR][1000 genomes]
rs4482803	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4492036	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4541547	0.97[EUR][1000 genomes]
rs4694803	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4694804	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4695099	0.92[EUR][1000 genomes]
rs4695101	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4695109	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6447448	0.92[EUR][1000 genomes]
rs6813294	0.92[EUR][1000 genomes]
rs6844212	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7654664	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7686726	0.97[EUR][1000 genomes]
rs9994867	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9995467	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv461352	chr4:45448030-45587299	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv594108	chr4:45448030-45587299	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45448200-45449000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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