Variant report
| Variant | rs16858552 |
|---|---|
| Chromosome Location | chr4:45470297-45470298 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10025670 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12507421 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs12644052 | 0.97[EUR][1000 genomes] |
| rs1872707 | 0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2349126 | 0.92[EUR][1000 genomes] |
| rs4308401 | 0.97[EUR][1000 genomes] |
| rs4320171 | 0.92[EUR][1000 genomes] |
| rs4345223 | 0.97[EUR][1000 genomes] |
| rs4356942 | 0.97[EUR][1000 genomes] |
| rs4359946 | 0.97[EUR][1000 genomes] |
| rs4434289 | 0.97[EUR][1000 genomes] |
| rs4482803 | 0.97[EUR][1000 genomes] |
| rs4492036 | 0.97[EUR][1000 genomes] |
| rs4541547 | 0.97[EUR][1000 genomes] |
| rs4694803 | 0.97[EUR][1000 genomes] |
| rs4694804 | 0.82[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4695099 | 0.92[EUR][1000 genomes] |
| rs4695101 | 0.97[EUR][1000 genomes] |
| rs4695109 | 0.83[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6447448 | 0.92[EUR][1000 genomes] |
| rs6813294 | 0.92[EUR][1000 genomes] |
| rs6844212 | 0.97[EUR][1000 genomes] |
| rs7654664 | 0.97[EUR][1000 genomes] |
| rs7686726 | 0.97[EUR][1000 genomes] |
| rs9994867 | 1.00[CHB][hapmap] |
| rs9995467 | 0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv594104 | chr4:45105210-45665828 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv461352 | chr4:45448030-45587299 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv594108 | chr4:45448030-45587299 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:45470200-45470800 | Enhancers | Fetal Heart | heart |
