Variant report
| Variant | rs4320171 |
|---|---|
| Chromosome Location | chr4:45378846-45378847 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GNPDA2-6 | chr4:45378094-45379798 | ucscGeneNc_uc003gxa_2 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10025670 | 0.92[EUR][1000 genomes] |
| rs10517131 | 0.87[AFR][1000 genomes] |
| rs12644052 | 0.95[EUR][1000 genomes] |
| rs16858552 | 0.92[EUR][1000 genomes] |
| rs1872707 | 0.95[EUR][1000 genomes] |
| rs2349126 | 1.00[EUR][1000 genomes] |
| rs4308401 | 0.95[EUR][1000 genomes] |
| rs4345223 | 0.95[EUR][1000 genomes] |
| rs4356942 | 0.95[EUR][1000 genomes] |
| rs4359946 | 0.95[EUR][1000 genomes] |
| rs4434289 | 0.95[EUR][1000 genomes] |
| rs4482803 | 0.95[EUR][1000 genomes] |
| rs4492036 | 0.95[EUR][1000 genomes] |
| rs4541547 | 0.95[EUR][1000 genomes] |
| rs4694803 | 0.95[EUR][1000 genomes] |
| rs4694804 | 0.92[EUR][1000 genomes] |
| rs4695099 | 1.00[EUR][1000 genomes] |
| rs4695101 | 0.95[EUR][1000 genomes] |
| rs4695109 | 0.95[EUR][1000 genomes] |
| rs6447448 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6813294 | 1.00[EUR][1000 genomes] |
| rs6844212 | 0.95[EUR][1000 genomes] |
| rs7654664 | 0.95[EUR][1000 genomes] |
| rs7686726 | 0.95[EUR][1000 genomes] |
| rs9994867 | 1.00[CEU][hapmap] |
| rs9995467 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv594104 | chr4:45105210-45665828 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv594107 | chr4:45338240-45436394 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
