Variant report

Variant	rs1002823
Chromosome Location	chr14:32777495-32777496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32776960..32777923-chr14:32978540..32979269,2	MCF-7	breast:
2	chr14:32775655..32778272-chr14:32848562..32851127,2	MCF-7	breast:
3	chr14:32775468..32778103-chr14:32779156..32781428,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1002822	0.98[ASN][1000 genomes]
rs10872861	0.96[ASN][1000 genomes]
rs12050391	0.98[ASN][1000 genomes]
rs12878927	0.92[ASN][1000 genomes]
rs12883285	0.92[ASN][1000 genomes]
rs17091622	0.95[ASN][1000 genomes]
rs17091625	0.95[ASN][1000 genomes]
rs17098639	0.88[ASN][1000 genomes]
rs17098672	0.95[ASN][1000 genomes]
rs1957656	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2383307	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2383308	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34022213	0.90[ASN][1000 genomes]
rs34758894	0.92[ASN][1000 genomes]
rs35479049	0.90[ASN][1000 genomes]
rs35813050	0.98[ASN][1000 genomes]
rs36037602	0.90[ASN][1000 genomes]
rs36110283	0.95[ASN][1000 genomes]
rs4573842	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9672094	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901594	chr14:32772850-32786268	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32768000-32780000	Weak transcription	Psoas Muscle	Psoas
2	chr14:32769800-32780800	Weak transcription	Left Ventricle	heart
3	chr14:32772800-32778400	Enhancers	Fetal Intestine Large	intestine
4	chr14:32774000-32778200	Weak transcription	Pancreas	Pancrea
5	chr14:32775400-32778400	Enhancers	Fetal Intestine Small	intestine
6	chr14:32775600-32777800	Enhancers	NHEK	skin
7	chr14:32775800-32777800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:32775800-32777800	Enhancers	Hela-S3	cervix
9	chr14:32776000-32777600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:32776000-32777600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:32776400-32778200	Enhancers	Liver	Liver
12	chr14:32776600-32777800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:32776600-32777800	Enhancers	Colon Smooth Muscle	Colon
14	chr14:32776600-32778000	Enhancers	Duodenum Mucosa	Duodenum
15	chr14:32776800-32777800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:32776800-32778000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr14:32776800-32778000	Enhancers	HepG2	liver
18	chr14:32776800-32778400	Enhancers	Stomach Mucosa	stomach
19	chr14:32777000-32778400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr14:32777000-32780800	Weak transcription	HMEC	breast
21	chr14:32777000-32788000	Weak transcription	Esophagus	oesophagus
22	chr14:32777400-32777800	Weak transcription	Small Intestine	intestine
23	chr14:32777400-32778400	Enhancers	A549	lung
24	chr14:32777400-32780200	Weak transcription	Fetal Heart	heart
25	chr14:32777400-32791400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links