Variant report

Variant	rs12050391
Chromosome Location	chr14:32771346-32771347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1002822	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1002823	0.98[ASN][1000 genomes]
rs10483403	0.86[EUR][1000 genomes]
rs10872861	0.97[ASN][1000 genomes]
rs12878927	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12883285	0.95[ASN][1000 genomes]
rs17091622	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17091625	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17098639	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17098672	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957656	0.98[ASN][1000 genomes]
rs34022213	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34758894	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35479049	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35813050	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36037602	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36110283	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9672094	0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12050391	ARHGAP5	cis	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32763600-32771400	Weak transcription	Aorta	Aorta
2	chr14:32765200-32773600	Weak transcription	Pancreas	Pancrea
3	chr14:32768000-32780000	Weak transcription	Psoas Muscle	Psoas
4	chr14:32768200-32773400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:32768600-32776600	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:32769400-32772600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:32769800-32777200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:32769800-32780800	Weak transcription	Left Ventricle	heart
9	chr14:32770000-32773200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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