Variant report

Variant	rs17098639
Chromosome Location	chr14:32732781-32732782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32731562..32733975-chr14:32763214..32765356,2	MCF-7	breast:
2	chr14:32730953..32733918-chr14:32882288..32884788,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1002822	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1002823	0.88[ASN][1000 genomes]
rs10483403	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10872861	0.89[ASN][1000 genomes]
rs12050391	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12878927	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12883285	0.92[ASN][1000 genomes]
rs17091622	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17091625	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17098672	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1957656	0.88[ASN][1000 genomes]
rs34022213	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34758894	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35479049	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35813050	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36037602	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36110283	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9672094	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv564184	chr14:32688214-32734691	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32719000-32737600	Weak transcription	Left Ventricle	heart
2	chr14:32721400-32733000	Weak transcription	Fetal Heart	heart
3	chr14:32728200-32732800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr14:32728200-32742400	Weak transcription	Right Ventricle	heart
5	chr14:32729600-32732800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:32729600-32733200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:32729600-32739000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:32732000-32733000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:32732000-32733000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
10	chr14:32732200-32732800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:32732200-32732800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
12	chr14:32732200-32732800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:32732200-32732800	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr14:32732200-32733000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:32732200-32733000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:32732200-32733000	ZNF genes & repeats	Ovary	ovary
17	chr14:32732200-32733000	ZNF genes & repeats	Dnd41	blood
18	chr14:32732200-32733200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:32732200-32733200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
20	chr14:32732400-32733000	ZNF genes & repeats	Fetal Lung	lung
21	chr14:32732400-32733000	ZNF genes & repeats	Pancreas	Pancrea
22	chr14:32732600-32733200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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