Variant report

Variant	rs10046334
Chromosome Location	chr6:140749589-140749590
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140425138..140426715-chr6:140748636..140750247,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10046405	1.00[AFR][1000 genomes]
rs10046430	1.00[AFR][1000 genomes]
rs9484373	1.00[AFR][1000 genomes]
rs9484374	1.00[AFR][1000 genomes]
rs9484375	1.00[AFR][1000 genomes]
rs9484376	1.00[AFR][1000 genomes]
rs9484377	1.00[AFR][1000 genomes]
rs9484379	1.00[AFR][1000 genomes]
rs9484380	1.00[AFR][1000 genomes]
rs9484381	1.00[AFR][1000 genomes]
rs9484385	0.87[AFR][1000 genomes]
rs9484386	0.87[AFR][1000 genomes]
rs9484396	1.00[YRI][hapmap]
rs9495699	1.00[AFR][1000 genomes]
rs9495700	1.00[AFR][1000 genomes]
rs9495701	1.00[AFR][1000 genomes]
rs9495702	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9495703	1.00[AFR][1000 genomes]
rs9495705	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9495708	0.87[AFR][1000 genomes]
rs9495709	0.87[AFR][1000 genomes]
rs9495712	0.87[AFR][1000 genomes]
rs9495714	0.87[AFR][1000 genomes]
rs9495719	0.87[AFR][1000 genomes]
rs9495720	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3377843	chr6:140749308-140767126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140729000-140754000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:140748000-140758800	Weak transcription	Ovary	ovary
3	chr6:140748800-140752800	Weak transcription	Psoas Muscle	Psoas
4	chr6:140749400-140751400	Weak transcription	Placenta	Placenta

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