Variant report

Variant	rs9484380
Chromosome Location	chr6:140757656-140757657
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140757123..140759381-chr6:140760081..140761694,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10046334	1.00[AFR][1000 genomes]
rs10046405	1.00[AFR][1000 genomes]
rs10046430	1.00[AFR][1000 genomes]
rs9484373	1.00[AFR][1000 genomes]
rs9484374	1.00[AFR][1000 genomes]
rs9484375	1.00[AFR][1000 genomes]
rs9484376	1.00[AFR][1000 genomes]
rs9484377	1.00[AFR][1000 genomes]
rs9484379	1.00[AFR][1000 genomes]
rs9484381	1.00[AFR][1000 genomes]
rs9484385	0.87[AFR][1000 genomes]
rs9484386	0.87[AFR][1000 genomes]
rs9495699	1.00[AFR][1000 genomes]
rs9495700	1.00[AFR][1000 genomes]
rs9495701	1.00[AFR][1000 genomes]
rs9495702	1.00[AFR][1000 genomes]
rs9495703	1.00[AFR][1000 genomes]
rs9495705	0.87[AFR][1000 genomes]
rs9495708	0.87[AFR][1000 genomes]
rs9495709	0.87[AFR][1000 genomes]
rs9495712	0.87[AFR][1000 genomes]
rs9495714	0.87[AFR][1000 genomes]
rs9495719	0.87[AFR][1000 genomes]
rs9495720	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3377843	chr6:140749308-140767126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140748000-140758800	Weak transcription	Ovary	ovary
2	chr6:140755400-140759400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:140755800-140758400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:140756200-140758600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:140756200-140759400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:140756400-140758200	Weak transcription	Placenta	Placenta
7	chr6:140757000-140758000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:140757000-140758000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:140757000-140758000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:140757000-140758200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:140757000-140759400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:140757000-140760600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:140757200-140757800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:140757200-140757800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:140757200-140757800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:140757200-140757800	Flanking Active TSS	HSMMtube	muscle
17	chr6:140757200-140758000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:140757200-140758000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:140757200-140758000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:140757200-140758000	Enhancers	Colon Smooth Muscle	Colon
21	chr6:140757200-140758000	Flanking Active TSS	Fetal Heart	heart
22	chr6:140757200-140758000	Enhancers	NH-A	brain
23	chr6:140757200-140758200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:140757200-140758200	Enhancers	HSMM	muscle
25	chr6:140757200-140759800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:140757200-140759800	Enhancers	HMEC	breast
27	chr6:140757400-140758000	Enhancers	Rectal Smooth Muscle	rectum
28	chr6:140757400-140758000	Weak transcription	NHDF-Ad	bronchial
29	chr6:140757400-140758200	Enhancers	Osteobl	bone
30	chr6:140757600-140757800	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr6:140757600-140758000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:140757600-140758000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr6:140757600-140758000	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:140757600-140758600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:140757600-140758800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:140757600-140758800	Weak transcription	NHEK	skin
37	chr6:140757600-140759200	Weak transcription	NHLF	lung
38	chr6:140757600-140759400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:140757600-140762400	Weak transcription	H1 Cell Line	embryonic stem cell

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