Variant report

Variant	rs9495705
Chromosome Location	chr6:140767092-140767093
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140718875..140720983-chr6:140765864..140768587,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10046334	0.87[AFR][1000 genomes]
rs10046405	0.87[AFR][1000 genomes]
rs10046430	0.87[AFR][1000 genomes]
rs9484373	0.87[AFR][1000 genomes]
rs9484374	0.87[AFR][1000 genomes]
rs9484375	0.87[AFR][1000 genomes]
rs9484376	0.87[AFR][1000 genomes]
rs9484377	0.87[AFR][1000 genomes]
rs9484379	0.87[AFR][1000 genomes]
rs9484380	0.87[AFR][1000 genomes]
rs9484381	0.87[AFR][1000 genomes]
rs9484385	1.00[AFR][1000 genomes]
rs9484386	1.00[AFR][1000 genomes]
rs9484396	1.00[YRI][hapmap]
rs9495699	0.87[AFR][1000 genomes]
rs9495700	0.87[AFR][1000 genomes]
rs9495701	0.87[AFR][1000 genomes]
rs9495702	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9495703	0.87[AFR][1000 genomes]
rs9495708	1.00[AFR][1000 genomes]
rs9495709	1.00[AFR][1000 genomes]
rs9495712	1.00[AFR][1000 genomes]
rs9495714	1.00[AFR][1000 genomes]
rs9495719	1.00[AFR][1000 genomes]
rs9495720	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3377843	chr6:140749308-140767126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140762600-140767200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:140765200-140767200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:140765600-140767800	Enhancers	HUVEC	blood vessel
4	chr6:140765800-140767800	Enhancers	Fetal Heart	heart
5	chr6:140765800-140767800	Enhancers	NHDF-Ad	bronchial
6	chr6:140766000-140767600	Enhancers	Osteobl	bone
7	chr6:140766000-140767800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:140766000-140767800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:140766000-140767800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:140766200-140767800	Enhancers	HSMM	muscle
11	chr6:140766400-140767200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:140766400-140767200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:140766400-140767600	Enhancers	NH-A	brain
14	chr6:140766400-140768000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:140766600-140767200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:140766600-140767200	Enhancers	Adipose Nuclei	Adipose
17	chr6:140766600-140767400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:140766600-140767800	Enhancers	NHEK	skin
19	chr6:140766800-140767200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr6:140766800-140767200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:140766800-140767400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:140766800-140767600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:140766800-140767600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr6:140766800-140767600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:140766800-140767600	Enhancers	NHLF	lung
26	chr6:140766800-140767800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr6:140766800-140767800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:140766800-140768000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:140767000-140767400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:140767000-140767600	Enhancers	HSMMtube	muscle
31	chr6:140767000-140767800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:140767000-140767800	Enhancers	HMEC	breast

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