Variant report

Variant	rs9484379
Chromosome Location	chr6:140757137-140757138
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139694272..139697265-chr6:140755488..140757218,2	MCF-7	breast:
2	chr6:140757123..140759381-chr6:140760081..140761694,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10046334	1.00[AFR][1000 genomes]
rs10046405	1.00[AFR][1000 genomes]
rs10046430	1.00[AFR][1000 genomes]
rs9484373	1.00[AFR][1000 genomes]
rs9484374	1.00[AFR][1000 genomes]
rs9484375	1.00[AFR][1000 genomes]
rs9484376	1.00[AFR][1000 genomes]
rs9484377	1.00[AFR][1000 genomes]
rs9484380	1.00[AFR][1000 genomes]
rs9484381	1.00[AFR][1000 genomes]
rs9484385	0.87[AFR][1000 genomes]
rs9484386	0.87[AFR][1000 genomes]
rs9495699	1.00[AFR][1000 genomes]
rs9495700	1.00[AFR][1000 genomes]
rs9495701	1.00[AFR][1000 genomes]
rs9495702	1.00[AFR][1000 genomes]
rs9495703	1.00[AFR][1000 genomes]
rs9495705	0.87[AFR][1000 genomes]
rs9495708	0.87[AFR][1000 genomes]
rs9495709	0.87[AFR][1000 genomes]
rs9495712	0.87[AFR][1000 genomes]
rs9495714	0.87[AFR][1000 genomes]
rs9495719	0.87[AFR][1000 genomes]
rs9495720	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3377843	chr6:140749308-140767126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140748000-140758800	Weak transcription	Ovary	ovary
2	chr6:140755400-140757200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:140755400-140757200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:140755400-140759400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:140755800-140757200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:140755800-140758400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:140756000-140757200	Weak transcription	HMEC	breast
8	chr6:140756000-140757400	Weak transcription	Osteobl	bone
9	chr6:140756200-140757200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:140756200-140758600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:140756200-140759400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:140756400-140757200	Active TSS	HSMMtube	muscle
13	chr6:140756400-140757200	Weak transcription	NHDF-Ad	bronchial
14	chr6:140756400-140758200	Weak transcription	Placenta	Placenta
15	chr6:140756600-140757200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:140757000-140757200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:140757000-140757200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr6:140757000-140757200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:140757000-140757200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr6:140757000-140757200	Enhancers	Fetal Heart	heart
21	chr6:140757000-140757400	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr6:140757000-140758000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:140757000-140758000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:140757000-140758000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:140757000-140758200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:140757000-140759400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:140757000-140760600	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links