Variant report

Variant	rs10049113
Chromosome Location	chr3:46327509-46327510
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13433751	1.00[AMR][1000 genomes]
rs17141103	1.00[AMR][1000 genomes]
rs1800945	1.00[AMR][1000 genomes]
rs28361974	1.00[AMR][1000 genomes]
rs28366811	1.00[AMR][1000 genomes]
rs28483827	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28543044	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28620009	1.00[AMR][1000 genomes]
rs3918377	1.00[AMR][1000 genomes]
rs41485850	1.00[AMR][1000 genomes]
rs4987124	1.00[AMR][1000 genomes]
rs9830751	1.00[AMR][1000 genomes]
rs9840685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9842607	1.00[AMR][1000 genomes]
rs9856343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9861910	1.00[AFR][1000 genomes]
rs9873805	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46317600-46329200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:46317800-46329200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:46318000-46331400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr3:46321400-46327800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:46322200-46329200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:46323000-46327600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr3:46323000-46328000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr3:46323000-46328200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr3:46323000-46329200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr3:46323800-46328000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:46324400-46331000	Weak transcription	Lung	lung
12	chr3:46324600-46336600	Weak transcription	Gastric	stomach
13	chr3:46326200-46331000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:46326800-46328000	Enhancers	Duodenum Mucosa	Duodenum
15	chr3:46327000-46328000	Enhancers	GM12878-XiMat	blood
16	chr3:46327200-46329000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr3:46327200-46329200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:46327200-46329400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:46327200-46337800	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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