Variant report

Variant	rs28366811
Chromosome Location	chr3:46338936-46338937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10049113	1.00[AMR][1000 genomes]
rs13433751	1.00[AMR][1000 genomes]
rs17141103	1.00[AMR][1000 genomes]
rs1800945	1.00[AMR][1000 genomes]
rs28361974	1.00[AMR][1000 genomes]
rs28483827	1.00[AMR][1000 genomes]
rs28543044	1.00[AMR][1000 genomes]
rs28620009	1.00[AMR][1000 genomes]
rs3918377	1.00[AMR][1000 genomes]
rs41485850	1.00[AMR][1000 genomes]
rs4987124	1.00[AMR][1000 genomes]
rs9830751	1.00[AMR][1000 genomes]
rs9840685	1.00[AMR][1000 genomes]
rs9842607	1.00[AMR][1000 genomes]
rs9856343	1.00[AMR][1000 genomes]
rs9873805	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46334800-46339200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr3:46335000-46345400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46335400-46342800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:46336200-46339000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:46336400-46339000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:46336400-46339200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:46336600-46339200	Weak transcription	Primary B cells from cord blood	blood
8	chr3:46337600-46342800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:46337600-46343400	Enhancers	Fetal Thymus	thymus
10	chr3:46337800-46343800	Enhancers	Dnd41	blood
11	chr3:46338000-46340400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:46338000-46343600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr3:46338000-46343600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:46338200-46340000	Enhancers	GM12878-XiMat	blood
15	chr3:46338200-46344200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:46338400-46339800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:46338400-46342800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr3:46338400-46343600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:46338400-46343800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:46338400-46344800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr3:46338600-46339400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:46338600-46339400	Enhancers	Lung	lung
23	chr3:46338600-46339400	Enhancers	Thymus	Thymus
24	chr3:46338600-46339600	Enhancers	NHDF-Ad	bronchial
25	chr3:46338600-46339800	Enhancers	NHEK	skin
26	chr3:46338600-46340600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr3:46338600-46341200	Enhancers	Spleen	Spleen
28	chr3:46338600-46344000	Enhancers	Primary T cells from cord blood	blood
29	chr3:46338600-46344200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr3:46338600-46344200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr3:46338600-46344400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr3:46338800-46339000	Enhancers	Brain Hippocampus Middle	brain
33	chr3:46338800-46339600	Enhancers	Brain Anterior Caudate	brain
34	chr3:46338800-46339800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:46338800-46339800	Enhancers	HMEC	breast
36	chr3:46338800-46340400	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr3:46338800-46340600	Enhancers	Placenta	Placenta
38	chr3:46338800-46343200	Enhancers	Primary hematopoietic stem cells	blood

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