Variant report

Variant	rs9842607
Chromosome Location	chr3:46282270-46282271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10049113	1.00[AMR][1000 genomes]
rs13433751	1.00[AMR][1000 genomes]
rs17141103	1.00[AMR][1000 genomes]
rs1800945	1.00[AMR][1000 genomes]
rs28361974	1.00[AMR][1000 genomes]
rs28366811	1.00[AMR][1000 genomes]
rs28483827	1.00[AMR][1000 genomes]
rs28543044	1.00[AMR][1000 genomes]
rs28620009	1.00[AMR][1000 genomes]
rs3918377	1.00[AMR][1000 genomes]
rs41485850	1.00[AMR][1000 genomes]
rs4987124	1.00[AMR][1000 genomes]
rs9830751	1.00[AMR][1000 genomes]
rs9840685	1.00[AMR][1000 genomes]
rs9856343	1.00[AMR][1000 genomes]
rs9873805	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46278400-46282600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr3:46278400-46283600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:46278600-46282800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr3:46278600-46283400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:46278600-46283400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:46281200-46282400	Enhancers	Fetal Heart	heart
7	chr3:46281600-46282600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:46281600-46285600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:46281600-46288600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:46281800-46284400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:46282000-46283600	Weak transcription	Fetal Thymus	thymus
12	chr3:46282200-46283000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:46282200-46283800	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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