Variant report

Variant	rs28361974
Chromosome Location	chr3:46305551-46305552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10049113	1.00[AMR][1000 genomes]
rs13433751	1.00[AMR][1000 genomes]
rs17141103	1.00[AMR][1000 genomes]
rs17217831	0.85[AFR][1000 genomes]
rs1800945	1.00[AMR][1000 genomes]
rs28366811	1.00[AMR][1000 genomes]
rs28483827	1.00[AMR][1000 genomes]
rs28543044	1.00[AMR][1000 genomes]
rs28620009	1.00[AMR][1000 genomes]
rs3918377	1.00[AMR][1000 genomes]
rs41485850	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9830751	1.00[AMR][1000 genomes]
rs9840685	1.00[AMR][1000 genomes]
rs9842607	1.00[AMR][1000 genomes]
rs9856343	1.00[AMR][1000 genomes]
rs9873805	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46303400-46315200	Weak transcription	Gastric	stomach
2	chr3:46304600-46308200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:46304600-46308200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:46304600-46310800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:46305000-46305600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:46305200-46306000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:46305200-46306000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:46305200-46306800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:46305400-46305800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:46305400-46306000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:46305400-46306000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:46305400-46306000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:46305400-46309200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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