Variant report

Variant	rs41485850
Chromosome Location	chr10:26006448-26006449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10049113	1.00[AMR][1000 genomes]
rs13433751	1.00[AMR][1000 genomes]
rs17141103	1.00[AMR][1000 genomes]
rs17217831	0.82[AFR][1000 genomes]
rs1800945	1.00[AMR][1000 genomes]
rs28361974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28366811	1.00[AMR][1000 genomes]
rs28483827	1.00[AMR][1000 genomes]
rs28543044	1.00[AMR][1000 genomes]
rs28620009	1.00[AMR][1000 genomes]
rs3918377	1.00[AMR][1000 genomes]
rs4987124	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9830751	1.00[AMR][1000 genomes]
rs9840685	1.00[AMR][1000 genomes]
rs9842607	1.00[AMR][1000 genomes]
rs9856343	1.00[AMR][1000 genomes]
rs9873805	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3380301	chr10:26005549-26011700	Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26005000-26009400	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr10:26005400-26011800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:26006400-26006600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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