Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10157885	0.83[ASN][1000 genomes]
rs12080991	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.92[ASN][1000 genomes]
rs12143004	0.85[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs17277358	0.86[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17361990	0.86[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs17362128	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2017688	0.81[ASN][1000 genomes]
rs2274230	0.86[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs28459842	0.94[ASN][1000 genomes]
rs28914474	0.83[ASN][1000 genomes]
rs28914485	0.83[ASN][1000 genomes]
rs34415902	0.95[EUR][1000 genomes]
rs3753532	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs55642919	0.83[ASN][1000 genomes]
rs55825882	0.81[ASN][1000 genomes]
rs55827544	0.94[ASN][1000 genomes]
rs55920203	0.81[ASN][1000 genomes]
rs55955319	0.94[ASN][1000 genomes]
rs56382583	0.83[ASN][1000 genomes]
rs60741626	0.94[ASN][1000 genomes]
rs60826716	0.94[ASN][1000 genomes]
rs6668200	0.86[CEU][hapmap]
rs6669988	0.94[ASN][1000 genomes]
rs9650997	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9724754	0.86[CEU][hapmap];0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9803885	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1004959	SOAT1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179250800-179256600	Weak transcription	HepG2	liver

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