The 2.0 version of rSNPBase

Variant report

Variant rs56382583
Chromosome Location chr1:179135120-179135121
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179112400-179139000 Weak transcription K562 blood
2 chr1:179117800-179186000 Weak transcription Fetal Stomach stomach
3 chr1:179119000-179135200 Weak transcription Primary hematopoietic stem cells blood
4 chr1:179121200-179136200 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr1:179121800-179135800 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:179121800-179138400 Weak transcription Aorta Aorta
7 chr1:179122000-179139000 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:179122000-179189400 Weak transcription Primary B cells from cord blood blood
9 chr1:179122400-179153000 Weak transcription Primary T cells from cord blood blood
10 chr1:179122800-179139000 Weak transcription Lung lung
11 chr1:179122800-179141600 Weak transcription Fetal Intestine Large intestine
12 chr1:179123400-179136200 Weak transcription Colon Smooth Muscle Colon
13 chr1:179124200-179139000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:179127400-179139200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr1:179130600-179136000 Weak transcription GM12878-XiMat blood
16 chr1:179132400-179135200 Enhancers NHEK skin
17 chr1:179132600-179136000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:179132600-179139000 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr1:179132800-179135600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr1:179133400-179135600 Weak transcription Fetal Brain Male brain
21 chr1:179133800-179135200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr1:179133800-179135200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
23 chr1:179133800-179136200 Weak transcription NHLF lung
24 chr1:179134000-179135600 Weak transcription Osteobl bone
25 chr1:179134000-179138200 Weak transcription Hela-S3 cervix
26 chr1:179134000-179139000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr1:179134000-179146600 Weak transcription HUES64 Cell Line embryonic stem cell
28 chr1:179134000-179169000 Weak transcription Fetal Intestine Small intestine
29 chr1:179134200-179139400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr1:179134400-179135400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr1:179134400-179135600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:179134600-179135600 Weak transcription Muscle Satellite Cultured Cells --
33 chr1:179134600-179136200 Weak transcription HSMMtube muscle
34 chr1:179134600-179136200 Weak transcription NHDF-Ad bronchial
35 chr1:179134600-179136400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr1:179134600-179137800 Weak transcription NH-A brain
37 chr1:179134600-179138600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:179134600-179139200 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr1:179134600-179139200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr1:179134600-179139200 Weak transcription HepG2 liver
41 chr1:179134800-179136200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:179134800-179138800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:179134800-179138800 Weak transcription HMEC breast
44 chr1:179135000-179135600 Weak transcription HSMM muscle
45 chr1:179135000-179136000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr1:179135000-179136400 Weak transcription A549 lung
47 chr1:179135000-179139000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015