Variant report

Variant	rs9650998
Chromosome Location	chr1:179124737-179124738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179122193..179124932-chr1:179127076..179128871,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10157885	0.89[EUR][1000 genomes]
rs17277358	0.97[EUR][1000 genomes]
rs17361990	0.94[EUR][1000 genomes]
rs17362128	0.96[EUR][1000 genomes]
rs2017688	0.97[EUR][1000 genomes]
rs2274230	0.97[EUR][1000 genomes]
rs2493124	0.81[AFR][1000 genomes]
rs2636274	0.81[AFR][1000 genomes]
rs2816186	0.85[AFR][1000 genomes]
rs28459842	0.86[EUR][1000 genomes]
rs28914474	0.89[EUR][1000 genomes]
rs28914485	0.93[EUR][1000 genomes]
rs3753532	0.97[EUR][1000 genomes]
rs55642919	0.93[EUR][1000 genomes]
rs55825882	0.97[EUR][1000 genomes]
rs55827544	0.86[EUR][1000 genomes]
rs55920203	0.97[EUR][1000 genomes]
rs55955319	0.86[EUR][1000 genomes]
rs56382583	0.93[EUR][1000 genomes]
rs6668200	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650997	0.97[EUR][1000 genomes]
rs9724754	0.97[EUR][1000 genomes]
rs9803885	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011462	chr1:179117101-179128290	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1011210	chr1:179117101-179128676	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179112400-179133000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:179112400-179139000	Weak transcription	K562	blood
3	chr1:179113200-179133000	Weak transcription	Hela-S3	cervix
4	chr1:179116200-179133000	Weak transcription	NHDF-Ad	bronchial
5	chr1:179116400-179133400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:179117800-179133000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:179117800-179186000	Weak transcription	Fetal Stomach	stomach
8	chr1:179119000-179135200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:179119600-179133000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:179120200-179133800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:179121000-179125200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:179121200-179136200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:179121600-179125200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:179121600-179125800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:179121800-179126000	Enhancers	HepG2	liver
16	chr1:179121800-179135800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:179121800-179138400	Weak transcription	Aorta	Aorta
18	chr1:179122000-179135000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr1:179122000-179139000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:179122000-179189400	Weak transcription	Primary B cells from cord blood	blood
21	chr1:179122400-179153000	Weak transcription	Primary T cells from cord blood	blood
22	chr1:179122800-179125600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:179122800-179126800	Weak transcription	Pancreas	Pancrea
24	chr1:179122800-179139000	Weak transcription	Lung	lung
25	chr1:179122800-179141600	Weak transcription	Fetal Intestine Large	intestine
26	chr1:179123000-179128400	Weak transcription	HSMM	muscle
27	chr1:179123000-179133000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr1:179123400-179133000	Weak transcription	A549	lung
29	chr1:179123400-179136200	Weak transcription	Colon Smooth Muscle	Colon
30	chr1:179124200-179125800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:179124200-179128200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr1:179124200-179139000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:179124400-179124800	Enhancers	Adipose Nuclei	Adipose
34	chr1:179124400-179125400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:179124600-179124800	Enhancers	Left Ventricle	heart
36	chr1:179124600-179125400	Enhancers	Osteobl	bone

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