Variant report

Variant	rs28914474
Chromosome Location	chr1:179153675-179153676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1004959	0.83[ASN][1000 genomes]
rs10157885	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10158768	0.86[ASN][1000 genomes]
rs12080991	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12143004	0.81[ASN][1000 genomes]
rs17277358	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17361990	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17362128	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2017688	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274228	0.83[ASN][1000 genomes]
rs2274230	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28459842	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28914485	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3753532	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs45499094	0.83[ASN][1000 genomes]
rs55642919	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825882	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55827544	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55920203	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55955319	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56382583	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60741626	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60826716	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6668200	0.89[EUR][1000 genomes]
rs6669988	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9650997	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9650998	0.89[EUR][1000 genomes]
rs9724754	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9730271	0.86[ASN][1000 genomes]
rs9803885	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv946521	chr1:179153204-179156392	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179117800-179186000	Weak transcription	Fetal Stomach	stomach
2	chr1:179122000-179189400	Weak transcription	Primary B cells from cord blood	blood
3	chr1:179134000-179169000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:179139400-179157200	Weak transcription	K562	blood
5	chr1:179139400-179158800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:179139400-179196800	Weak transcription	Pancreas	Pancrea
7	chr1:179144800-179159200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:179145000-179158600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:179145000-179159800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:179145000-179159800	Weak transcription	Brain Angular Gyrus	brain
11	chr1:179145400-179159000	Weak transcription	Right Ventricle	heart
12	chr1:179146800-179175600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:179147600-179160000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr1:179147600-179174600	Weak transcription	Psoas Muscle	Psoas
15	chr1:179148000-179186000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:179148400-179185800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:179148800-179156000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:179149200-179157200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:179149800-179157000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:179150600-179157200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:179150600-179176000	Weak transcription	HSMM	muscle
22	chr1:179150800-179154000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:179150800-179170600	Weak transcription	Ovary	ovary
24	chr1:179150800-179178000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:179150800-179180400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:179151000-179155200	Weak transcription	Esophagus	oesophagus
27	chr1:179152400-179158600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:179153000-179154000	Strong transcription	Primary T cells from cord blood	blood
29	chr1:179153600-179160000	Weak transcription	GM12878-XiMat	blood
30	chr1:179153600-179169800	Weak transcription	Small Intestine	intestine

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