Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1004959	0.94[ASN][1000 genomes]
rs10157885	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12080991	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17277358	0.86[ASN][1000 genomes]
rs17361990	0.80[ASN][1000 genomes]
rs17362128	0.86[ASN][1000 genomes]
rs2017688	0.86[ASN][1000 genomes]
rs2274230	0.86[ASN][1000 genomes]
rs28459842	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28914474	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28914485	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3753532	0.86[ASN][1000 genomes]
rs55642919	0.88[ASN][1000 genomes]
rs55825882	0.86[ASN][1000 genomes]
rs55827544	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55920203	0.86[ASN][1000 genomes]
rs55955319	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56382583	0.88[ASN][1000 genomes]
rs60741626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669988	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650997	0.86[ASN][1000 genomes]
rs9724754	0.86[ASN][1000 genomes]
rs9803885	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179232200-179241800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:179233000-179234200	Enhancers	Fetal Kidney	kidney
3	chr1:179233200-179233800	Enhancers	Pancreatic Islets	Pancreatic Islet

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