Variant report

Variant	rs10055008
Chromosome Location	chr5:151148951-151148952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:151148547-151149867	HepG2	liver:	n/a	n/a
2	POLR2A	chr5:151148595-151149407	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr5:151148376-151153894	K562	blood:	n/a	n/a
4	POLR2A	chr5:151148919-151149130	ECC-1	luminal epithelium:	n/a	n/a
5	POLR2A	chr5:151148530-151149388	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:151141912..151146351-chr5:151146659..151152863,9	MCF-7	breast:
2	chr5:150861725..150863325-chr5:151147345..151150337,2	K562	blood:
3	chr5:151133870..151141079-chr5:151148554..151154544,14	MCF-7	breast:
4	chr5:151146976..151149918-chr5:151242837..151245370,2	K562	blood:
5	chr5:151136180..151141661-chr5:151146894..151154161,25	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000213433	TF binding region
G3BP1	TF binding region
ENSG00000177556	Chromatin interaction
ENSG00000213433	Chromatin interaction

rs_ID	r²[population]
rs10051560	1.00[AMR][1000 genomes]
rs10055248	1.00[AMR][1000 genomes]
rs10065309	1.00[AMR][1000 genomes]
rs10079059	1.00[AMR][1000 genomes]
rs10079784	1.00[AMR][1000 genomes]
rs10214405	1.00[AMR][1000 genomes]
rs10476999	1.00[AMR][1000 genomes]
rs10477002	1.00[AMR][1000 genomes]
rs11167554	1.00[AMR][1000 genomes]
rs13358809	1.00[AMR][1000 genomes]
rs28551068	1.00[AMR][1000 genomes]
rs62636581	1.00[AMR][1000 genomes]
rs6579902	0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6579903	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6871781	1.00[AMR][1000 genomes]
rs6885939	1.00[AMR][1000 genomes]
rs73279795	1.00[AMR][1000 genomes]
rs73281610	1.00[AMR][1000 genomes]
rs73281634	1.00[AMR][1000 genomes]
rs73281638	1.00[AMR][1000 genomes]
rs73281651	1.00[AMR][1000 genomes]
rs73281665	1.00[AMR][1000 genomes]
rs73281668	1.00[AMR][1000 genomes]
rs73281677	1.00[AMR][1000 genomes]
rs73281682	1.00[AMR][1000 genomes]
rs73281683	1.00[AMR][1000 genomes]
rs73281687	1.00[AMR][1000 genomes]
rs73285935	1.00[AMR][1000 genomes]
rs73285978	1.00[AMR][1000 genomes]
rs7706843	0.88[YRI][hapmap];1.00[AMR][1000 genomes]

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151138800-151149600	Weak transcription	Aorta	Aorta
2	chr5:151138800-151149800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:151139200-151149600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:151139400-151149800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:151139400-151149800	Weak transcription	Right Atrium	heart
6	chr5:151143200-151149800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:151145600-151150000	Weak transcription	Pancreas	Pancrea
8	chr5:151145800-151149600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:151145800-151150000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:151146000-151149800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:151147200-151149800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:151147400-151149000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:151148600-151149600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:151148600-151149600	Enhancers	Primary B cells from cord blood	blood
15	chr5:151148600-151149800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:151148800-151149600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr5:151148800-151149800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr5:151148800-151149800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:151148800-151149800	Weak transcription	A549	lung

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