Variant report
| Variant | rs73285935 |
|---|---|
| Chromosome Location | chr5:151228315-151228316 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:182360575..182361332-chr5:151227897..151228897,3 | MCF-7 | breast: | |
| 2 | chr1:182360867..182362429-chr5:151226919..151229896,2 | K562 | blood: | |
| 3 | chr1:182359822..182362122-chr5:151226896..151229921,7 | MCF-7 | breast: | |
| 4 | chr1:182360375..182361130-chr5:151227899..151228917,9 | HCT-116 | colon: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000135821 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10051560 | 1.00[AMR][1000 genomes] |
| rs10055008 | 1.00[AMR][1000 genomes] |
| rs10055248 | 1.00[AMR][1000 genomes] |
| rs10065309 | 1.00[AMR][1000 genomes] |
| rs10079059 | 1.00[AMR][1000 genomes] |
| rs10079784 | 1.00[AMR][1000 genomes] |
| rs10214405 | 1.00[AMR][1000 genomes] |
| rs10476999 | 1.00[AMR][1000 genomes] |
| rs10477002 | 1.00[AMR][1000 genomes] |
| rs11167554 | 1.00[AMR][1000 genomes] |
| rs13358809 | 1.00[AMR][1000 genomes] |
| rs28551068 | 1.00[AMR][1000 genomes] |
| rs57324465 | 0.80[AFR][1000 genomes] |
| rs62636581 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6579902 | 1.00[AMR][1000 genomes] |
| rs6579903 | 1.00[AMR][1000 genomes] |
| rs6871781 | 1.00[AMR][1000 genomes] |
| rs6885939 | 1.00[AMR][1000 genomes] |
| rs73279795 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73281610 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73281634 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73281638 | 1.00[AMR][1000 genomes] |
| rs73281651 | 1.00[AMR][1000 genomes] |
| rs73281665 | 1.00[AMR][1000 genomes] |
| rs73281668 | 1.00[AMR][1000 genomes] |
| rs73281677 | 1.00[AMR][1000 genomes] |
| rs73281682 | 1.00[AMR][1000 genomes] |
| rs73281683 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73281687 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73285978 | 1.00[AMR][1000 genomes] |
| rs73285984 | 0.85[AFR][1000 genomes] |
| rs73285987 | 0.85[AFR][1000 genomes] |
| rs7706843 | 1.00[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151219400-151229800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr5:151226800-151228600 | Enhancers | Fetal Brain Male | brain |
