Variant report

Variant	rs6871781
Chromosome Location	chr5:151249044-151249045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10037964	0.80[AFR][1000 genomes]
rs10051560	1.00[AMR][1000 genomes]
rs10055008	1.00[AMR][1000 genomes]
rs10055248	1.00[AMR][1000 genomes]
rs10065309	1.00[AMR][1000 genomes]
rs10079059	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10079784	1.00[AMR][1000 genomes]
rs10214405	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476999	1.00[AMR][1000 genomes]
rs10477002	1.00[AMR][1000 genomes]
rs11167554	1.00[AMR][1000 genomes]
rs13358809	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436419	0.94[AFR][1000 genomes]
rs28551068	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62636581	1.00[AMR][1000 genomes]
rs6579902	1.00[AMR][1000 genomes]
rs6579903	1.00[AMR][1000 genomes]
rs6885939	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279795	1.00[AMR][1000 genomes]
rs73281610	1.00[AMR][1000 genomes]
rs73281634	1.00[AMR][1000 genomes]
rs73281638	1.00[AMR][1000 genomes]
rs73281651	1.00[AMR][1000 genomes]
rs73281665	1.00[AMR][1000 genomes]
rs73281668	1.00[AMR][1000 genomes]
rs73281677	1.00[AMR][1000 genomes]
rs73281682	1.00[AMR][1000 genomes]
rs73281683	1.00[AMR][1000 genomes]
rs73281687	1.00[AMR][1000 genomes]
rs73285935	1.00[AMR][1000 genomes]
rs73285978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7706843	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808837	chr5:151238149-151260215	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1807514	chr5:151242208-151252867	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1807896	chr5:151242208-151252867	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1808791	chr5:151242208-151252867	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1808872	chr5:151242208-151252867	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3487128	chr5:151247859-151254357	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3471109	chr5:151248159-151252657	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3487127	chr5:151248309-151254207	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3487129	chr5:151248309-151254207	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151235200-151264200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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