Variant report

Variant	rs73281638
Chromosome Location	chr5:151156940-151156941
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:151156939-151157898	GM12892	blood:	n/a	n/a
2	POLR2A	chr5:151156838-151158151	K562	blood:	n/a	n/a

Variant related genes	Relation type
ATOX1	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10051560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055008	1.00[AMR][1000 genomes]
rs10055248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065309	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10079059	1.00[AMR][1000 genomes]
rs10079784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10214405	1.00[AMR][1000 genomes]
rs10476999	1.00[AMR][1000 genomes]
rs10477002	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11167554	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358809	1.00[AMR][1000 genomes]
rs28551068	1.00[AMR][1000 genomes]
rs62636581	1.00[AMR][1000 genomes]
rs6579902	1.00[AMR][1000 genomes]
rs6579903	1.00[AMR][1000 genomes]
rs6871781	1.00[AMR][1000 genomes]
rs6885939	1.00[AMR][1000 genomes]
rs73279795	1.00[AMR][1000 genomes]
rs73281610	1.00[AMR][1000 genomes]
rs73281634	1.00[AMR][1000 genomes]
rs73281651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281665	1.00[AMR][1000 genomes]
rs73281668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281683	1.00[AMR][1000 genomes]
rs73281687	1.00[AMR][1000 genomes]
rs73285935	1.00[AMR][1000 genomes]
rs73285978	1.00[AMR][1000 genomes]
rs7706843	1.00[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151152800-151160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:151152800-151163000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:151153000-151157200	Weak transcription	Left Ventricle	heart
4	chr5:151153000-151160000	Weak transcription	Gastric	stomach
5	chr5:151153000-151167400	Weak transcription	Esophagus	oesophagus
6	chr5:151153000-151167400	Weak transcription	Lung	lung
7	chr5:151153000-151167600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:151153800-151157200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr5:151153800-151160400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:151153800-151162000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr5:151153800-151165200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr5:151153800-151166800	Weak transcription	Colonic Mucosa	Colon
13	chr5:151153800-151167400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:151153800-151169800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:151154000-151157600	Enhancers	Colon Smooth Muscle	Colon
16	chr5:151154000-151157600	Enhancers	Fetal Heart	heart
17	chr5:151154000-151158000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr5:151154400-151157400	Weak transcription	Placenta	Placenta
19	chr5:151154400-151168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:151154400-151169000	Weak transcription	HSMMtube	muscle
21	chr5:151154600-151168800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr5:151154800-151157000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr5:151154800-151157200	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:151154800-151157400	Enhancers	Brain Angular Gyrus	brain
25	chr5:151154800-151158600	Weak transcription	Stomach Mucosa	stomach
26	chr5:151154800-151165000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr5:151155000-151157200	Weak transcription	Fetal Stomach	stomach
28	chr5:151155000-151157400	Genic enhancers	HSMM	muscle
29	chr5:151155000-151158200	Weak transcription	Primary B cells from cord blood	blood
30	chr5:151155200-151157000	Weak transcription	Osteobl	bone
31	chr5:151155200-151157200	Weak transcription	Right Ventricle	heart
32	chr5:151155200-151157400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
33	chr5:151155200-151157400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr5:151155200-151157400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr5:151155200-151157600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr5:151155200-151158400	Weak transcription	Fetal Intestine Large	intestine
37	chr5:151155200-151159600	Genic enhancers	Hela-S3	cervix
38	chr5:151155200-151160600	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr5:151155200-151163600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:151155200-151167600	Weak transcription	Spleen	Spleen
41	chr5:151155400-151157200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:151155400-151157200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr5:151155400-151157600	Genic enhancers	A549	lung
44	chr5:151155400-151158400	Weak transcription	Pancreas	Pancrea
45	chr5:151155400-151158800	Weak transcription	Fetal Brain Female	brain
46	chr5:151155400-151160600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr5:151155600-151157800	Strong transcription	Fetal Kidney	kidney
48	chr5:151155600-151158600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr5:151155800-151157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr5:151155800-151157400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links