Variant report

Variant	rs73281683
Chromosome Location	chr5:151204714-151204715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:151204595..151205535-chr5:151522142..151523020,2	K562	blood:
2	chr5:151204608..151205517-chr5:151728966..151729819,3	MCF-7	breast:
3	chr5:151204602..151205567-chr5:151884635..151885219,2	K562	blood:
4	chr5:151204659..151205617-chr5:151544194..151544853,2	MCF-7	breast:
5	chr5:151204677..151205872-chr5:151522532..151523052,3	MCF-7	breast:
6	chr5:151150433..151152215-chr5:151203690..151206596,2	MCF-7	breast:
7	chr5:151204622..151206484-chr5:151650636..151651662,12	MCF-7	breast:
8	chr5:151199513..151202709-chr5:151203145..151205283,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000145907	Chromatin interaction
ENSG00000177556	Chromatin interaction

rs_ID	r²[population]
rs10051560	1.00[AMR][1000 genomes]
rs10055008	1.00[AMR][1000 genomes]
rs10055248	1.00[AMR][1000 genomes]
rs10065309	1.00[AMR][1000 genomes]
rs10079059	1.00[AMR][1000 genomes]
rs10079784	1.00[AMR][1000 genomes]
rs10214405	1.00[AMR][1000 genomes]
rs10476999	1.00[AMR][1000 genomes]
rs10477002	1.00[AMR][1000 genomes]
rs11167554	1.00[AMR][1000 genomes]
rs13358809	1.00[AMR][1000 genomes]
rs28551068	1.00[AMR][1000 genomes]
rs62636581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6579902	1.00[AMR][1000 genomes]
rs6579903	1.00[AMR][1000 genomes]
rs6871781	1.00[AMR][1000 genomes]
rs6885939	1.00[AMR][1000 genomes]
rs73279795	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281610	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281634	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281638	1.00[AMR][1000 genomes]
rs73281651	1.00[AMR][1000 genomes]
rs73281665	1.00[AMR][1000 genomes]
rs73281668	1.00[AMR][1000 genomes]
rs73281677	1.00[AMR][1000 genomes]
rs73281682	1.00[AMR][1000 genomes]
rs73281687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285978	1.00[AMR][1000 genomes]
rs73285984	0.80[AFR][1000 genomes]
rs73285987	0.80[AFR][1000 genomes]
rs7706843	1.00[AMR][1000 genomes]

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151164000-151207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:151171800-151205200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:151179800-151208400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:151183600-151210600	Weak transcription	Lung	lung
5	chr5:151183800-151206000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:151183800-151208400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:151183800-151209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:151183800-151213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:151188200-151210400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr5:151190000-151204800	Weak transcription	Fetal Stomach	stomach
11	chr5:151190400-151210400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:151192200-151208200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:151192400-151205200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:151192400-151209800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr5:151192400-151210000	Weak transcription	Aorta	Aorta
16	chr5:151192400-151211200	Weak transcription	NHLF	lung
17	chr5:151192600-151205200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr5:151192600-151206000	Weak transcription	Thymus	Thymus
19	chr5:151192600-151206200	Weak transcription	Psoas Muscle	Psoas
20	chr5:151192600-151209800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr5:151192800-151205000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr5:151192800-151205200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:151192800-151208400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr5:151192800-151209600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr5:151192800-151209800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:151193000-151205600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:151193000-151207600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr5:151193000-151210400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:151193200-151210600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr5:151193600-151211400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:151194400-151207800	Weak transcription	Primary B cells from cord blood	blood
32	chr5:151194800-151204800	Weak transcription	Fetal Intestine Large	intestine
33	chr5:151194800-151206000	Weak transcription	Dnd41	blood
34	chr5:151194800-151206600	Weak transcription	Placenta	Placenta
35	chr5:151194800-151209000	Weak transcription	Brain Anterior Caudate	brain
36	chr5:151194800-151209600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr5:151194800-151210400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr5:151195000-151205200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:151195400-151206000	Weak transcription	K562	blood
40	chr5:151196200-151205200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr5:151196400-151205200	Weak transcription	Fetal Thymus	thymus
42	chr5:151196600-151205200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr5:151196600-151205600	Weak transcription	Hela-S3	cervix
44	chr5:151196600-151210400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr5:151196800-151208000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:151196800-151209400	Weak transcription	Liver	Liver
47	chr5:151196800-151211400	Weak transcription	GM12878-XiMat	blood
48	chr5:151197000-151205000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr5:151197000-151208000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr5:151197000-151208200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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