Variant report

Variant	rs10058833
Chromosome Location	chr5:150937193-150937194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10044879	0.83[AMR][1000 genomes]
rs10059380	0.86[EUR][1000 genomes]
rs10064935	0.86[EUR][1000 genomes]
rs10076684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10476989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2304023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28393159	0.91[AMR][1000 genomes]
rs28406331	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28502007	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28506125	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28556596	0.83[AMR][1000 genomes]
rs28605719	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28612803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28736662	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56838504	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58108509	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58297526	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58395047	0.86[EUR][1000 genomes]
rs59016671	0.83[AMR][1000 genomes]
rs59412412	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60163825	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60673682	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860179	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860376	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860421	0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6881602	0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883760	0.83[AMR][1000 genomes]
rs998076	0.82[AFR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150908200-150948000	Strong transcription	HMEC	breast
2	chr5:150908400-150944000	Strong transcription	NHEK	skin
3	chr5:150909200-150942400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:150911600-150942800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:150914200-150938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:150918200-150945400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:150931000-150942800	Weak transcription	Brain Angular Gyrus	brain
8	chr5:150934200-150949600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:150935400-150937400	Enhancers	Primary B cells from peripheral blood	blood
10	chr5:150935400-150938800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr5:150935600-150937600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:150935600-150939400	Enhancers	Placenta	Placenta
13	chr5:150936000-150938800	Weak transcription	Spleen	Spleen
14	chr5:150936000-150940800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:150936200-150937600	Enhancers	Adipose Nuclei	Adipose
16	chr5:150936600-150938200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:150936600-150938600	Weak transcription	Esophagus	oesophagus
18	chr5:150937000-150937200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr5:150937000-150937400	Enhancers	Brain Cingulate Gyrus	brain
20	chr5:150937000-150948600	Weak transcription	Right Atrium	heart

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