Variant report

Variant	rs6883760
Chromosome Location	chr5:150944561-150944562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10035812	0.96[ASN][1000 genomes]
rs10044879	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10058833	0.83[AMR][1000 genomes]
rs10059380	0.81[ASN][1000 genomes]
rs10064935	0.84[ASN][1000 genomes]
rs10074311	0.84[ASN][1000 genomes]
rs10076684	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10476989	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12386479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359319	0.84[ASN][1000 genomes]
rs13361506	0.84[ASN][1000 genomes]
rs2304023	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28393159	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406331	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28464529	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502007	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28506125	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28556596	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605719	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28612803	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28736662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56838504	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58108509	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58297526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58395047	0.81[ASN][1000 genomes]
rs58733181	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59016671	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59412412	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60163825	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60673682	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860179	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860376	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860421	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881602	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273970	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20633	chr5:150941705-150955343	Strong transcription Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150908200-150948000	Strong transcription	HMEC	breast
2	chr5:150918200-150945400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:150934200-150949600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr5:150937000-150948600	Weak transcription	Right Atrium	heart
5	chr5:150937600-150948600	Weak transcription	Adipose Nuclei	Adipose
6	chr5:150942600-150948400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:150942800-150945000	Weak transcription	Esophagus	oesophagus
8	chr5:150943200-150945200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:150943400-150945400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:150944000-150945400	Weak transcription	NHEK	skin
11	chr5:150944000-150948400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links