Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10035812	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10044879	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10059380	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10064935	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10074311	1.00[ASN][1000 genomes]
rs10476989	1.00[CHB][hapmap]
rs12386479	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13361506	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304023	1.00[CHB][hapmap]
rs28393159	0.84[ASN][1000 genomes]
rs28406331	0.84[ASN][1000 genomes]
rs28464529	0.84[ASN][1000 genomes]
rs28502007	0.84[ASN][1000 genomes]
rs28506125	0.84[ASN][1000 genomes]
rs28556596	0.84[ASN][1000 genomes]
rs28736662	0.84[ASN][1000 genomes]
rs56838504	0.84[ASN][1000 genomes]
rs58108509	0.84[ASN][1000 genomes]
rs58297526	0.84[ASN][1000 genomes]
rs58395047	0.97[ASN][1000 genomes]
rs59016671	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59412412	0.84[ASN][1000 genomes]
rs60163825	0.84[ASN][1000 genomes]
rs60673682	0.84[ASN][1000 genomes]
rs6860179	0.84[ASN][1000 genomes]
rs6860376	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6860421	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs6881602	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs6883760	0.84[ASN][1000 genomes]
rs73273970	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20633	chr5:150941705-150955343	Strong transcription Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv600038	chr5:150950853-150955127	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1811399	chr5:150952122-150954941	Weak transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150951200-150960400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:150951400-150959600	Weak transcription	Placenta	Placenta
3	chr5:150951600-150955800	Weak transcription	Primary B cells from cord blood	blood
4	chr5:150951600-150956400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:150951600-150960400	Genic enhancers	NHEK	skin
6	chr5:150952000-150955800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:150952600-150957000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:150953400-150956000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:150953600-150955400	Genic enhancers	HMEC	breast
10	chr5:150953600-150955600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:150953600-150956800	Weak transcription	Fetal Thymus	thymus
12	chr5:150954000-150959600	Weak transcription	Esophagus	oesophagus

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