Variant report

Variant	rs2304023
Chromosome Location	chr5:150932802-150932803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10035812	1.00[CHB][hapmap]
rs10044879	1.00[CHB][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes]
rs10058833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10059380	0.86[EUR][1000 genomes]
rs10064935	0.86[EUR][1000 genomes]
rs10076684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476989	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12386479	1.00[CHB][hapmap]
rs28393159	0.91[AMR][1000 genomes]
rs28406331	1.00[AMR][1000 genomes]
rs28502007	1.00[AMR][1000 genomes]
rs28506125	1.00[AMR][1000 genomes]
rs28556596	0.83[AMR][1000 genomes]
rs28605719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28612803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28736662	0.83[AMR][1000 genomes]
rs56838504	1.00[AMR][1000 genomes]
rs58108509	1.00[AMR][1000 genomes]
rs58297526	0.83[AMR][1000 genomes]
rs58395047	0.86[EUR][1000 genomes]
rs59016671	0.83[AMR][1000 genomes]
rs59412412	1.00[AMR][1000 genomes]
rs60163825	1.00[AMR][1000 genomes]
rs60673682	1.00[AMR][1000 genomes]
rs6860179	1.00[AMR][1000 genomes]
rs6860376	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs6860421	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs6881602	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs6883760	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7710247	0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150901800-150935600	Weak transcription	Fetal Intestine Small	intestine
2	chr5:150905800-150934000	Weak transcription	Adipose Nuclei	Adipose
3	chr5:150908200-150948000	Strong transcription	HMEC	breast
4	chr5:150908400-150933400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:150908400-150944000	Strong transcription	NHEK	skin
6	chr5:150909200-150942400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:150911600-150942800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:150914200-150935600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:150914200-150938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:150918200-150945400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:150924600-150935600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:150931000-150942800	Weak transcription	Brain Angular Gyrus	brain
13	chr5:150931800-150934400	Strong transcription	Esophagus	oesophagus
14	chr5:150932600-150934200	Enhancers	Skeletal Muscle Male	skeletal muscle

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