Variant report

Variant	rs10044879
Chromosome Location	chr5:150928934-150928935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10035812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058833	0.83[AMR][1000 genomes]
rs10059380	0.90[AMR][1000 genomes]
rs10064935	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10074311	0.80[ASN][1000 genomes]
rs10076684	0.83[AMR][1000 genomes]
rs10476989	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes]
rs12386479	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13359319	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13361506	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2304023	1.00[CHB][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes]
rs28393159	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28406331	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28464529	0.96[ASN][1000 genomes]
rs28502007	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28506125	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28556596	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28605719	0.83[AMR][1000 genomes]
rs28612803	0.83[AMR][1000 genomes]
rs28736662	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3097828	1.00[CEU][hapmap]
rs56838504	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58108509	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58297526	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58733181	0.96[ASN][1000 genomes]
rs59016671	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59412412	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60163825	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60673682	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6860179	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6860376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6860421	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6881602	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6883760	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73273970	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7710247	0.91[YRI][hapmap];0.85[AFR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150889000-150932600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr5:150901800-150935600	Weak transcription	Fetal Intestine Small	intestine
3	chr5:150905800-150934000	Weak transcription	Adipose Nuclei	Adipose
4	chr5:150908200-150948000	Strong transcription	HMEC	breast
5	chr5:150908400-150933400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:150908400-150944000	Strong transcription	NHEK	skin
7	chr5:150909200-150942400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:150911600-150942800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:150914200-150935600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:150914200-150938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:150918200-150945400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:150924600-150935600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:150928800-150931400	Strong transcription	Esophagus	oesophagus

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