Variant report

Variant	rs1006458
Chromosome Location	chr13:80461247-80461248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11840740	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12323034	0.91[EUR][1000 genomes]
rs12861375	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13378771	0.87[ASN][1000 genomes]
rs2007276	0.88[ASN][1000 genomes]
rs34710670	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3861144	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3898550	0.87[ASN][1000 genomes]
rs3898551	0.87[ASN][1000 genomes]
rs3916021	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4514565	0.82[ASN][1000 genomes]
rs4533153	0.88[ASN][1000 genomes]
rs4884141	0.88[ASN][1000 genomes]
rs4884142	0.84[ASN][1000 genomes]
rs4885680	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4885681	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57067871	0.85[ASN][1000 genomes]
rs6563146	0.84[ASN][1000 genomes]
rs7318554	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7329042	0.88[ASN][1000 genomes]
rs7329614	0.87[ASN][1000 genomes]
rs7330635	0.87[ASN][1000 genomes]
rs7333212	0.84[ASN][1000 genomes]
rs7982819	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7995887	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7997147	0.91[EUR][1000 genomes]
rs9318660	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9318662	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9545250	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9545261	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9545268	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9565536	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9593417	0.88[ASN][1000 genomes]
rs9593418	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9601281	0.85[ASN][1000 genomes]
rs9601283	0.87[ASN][1000 genomes]
rs9601286	0.84[ASN][1000 genomes]
rs9601288	0.86[ASN][1000 genomes]
rs9601289	0.86[ASN][1000 genomes]
rs9601290	0.86[ASN][1000 genomes]
rs9601291	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9601294	0.89[EUR][1000 genomes]
rs996823	0.86[ASN][1000 genomes]
rs996824	0.81[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80449000-80472400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80455400-80461400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr13:80456200-80461400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:80458800-80461400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr13:80460800-80461400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:80461200-80461600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:80461200-80461600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:80461200-80461600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:80461200-80461800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr13:80461200-80462000	Enhancers	Fetal Thymus	thymus

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