Variant report

Variant	rs9601294
Chromosome Location	chr13:80509087-80509088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1006458	0.89[EUR][1000 genomes]
rs11838566	0.81[ASN][1000 genomes]
rs11840740	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11841357	0.81[ASN][1000 genomes]
rs11843138	0.95[ASN][1000 genomes]
rs12323034	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12323035	0.91[ASN][1000 genomes]
rs12583025	0.98[ASN][1000 genomes]
rs12583645	0.98[ASN][1000 genomes]
rs12861375	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12867413	0.83[ASN][1000 genomes]
rs12868561	0.83[ASN][1000 genomes]
rs12876835	0.93[ASN][1000 genomes]
rs13378771	0.81[ASN][1000 genomes]
rs1811362	0.91[ASN][1000 genomes]
rs2007276	0.82[ASN][1000 genomes]
rs2118798	0.83[ASN][1000 genomes]
rs2304638	0.96[ASN][1000 genomes]
rs2329003	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2329148	0.83[ASN][1000 genomes]
rs34710670	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36063327	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3843950	0.81[ASN][1000 genomes]
rs3850060	0.87[EUR][1000 genomes]
rs3850061	0.82[ASN][1000 genomes]
rs3850062	0.82[ASN][1000 genomes]
rs3850064	0.83[ASN][1000 genomes]
rs3861143	0.98[ASN][1000 genomes]
rs3861144	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3898550	0.81[ASN][1000 genomes]
rs3898551	0.81[ASN][1000 genomes]
rs3916021	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4052505	0.99[ASN][1000 genomes]
rs4306392	0.81[ASN][1000 genomes]
rs4533153	0.82[ASN][1000 genomes]
rs4884141	0.82[ASN][1000 genomes]
rs4884142	0.80[ASN][1000 genomes]
rs4885680	0.89[EUR][1000 genomes]
rs4885681	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4885683	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs55978445	0.83[ASN][1000 genomes]
rs6563150	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7318554	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7329042	0.82[ASN][1000 genomes]
rs7329614	0.81[ASN][1000 genomes]
rs7330635	0.81[ASN][1000 genomes]
rs7332417	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7336725	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982819	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995887	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7997147	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9318660	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9318662	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9318663	0.95[ASN][1000 genomes]
rs9545250	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9545261	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9545268	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545275	0.81[EUR][1000 genomes]
rs9565536	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9593417	0.82[ASN][1000 genomes]
rs9593418	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9593420	0.94[ASN][1000 genomes]
rs9593421	0.98[ASN][1000 genomes]
rs9601283	0.83[ASN][1000 genomes]
rs9601288	0.82[ASN][1000 genomes]
rs9601289	0.82[ASN][1000 genomes]
rs9601290	0.82[ASN][1000 genomes]
rs9601291	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9601293	0.99[ASN][1000 genomes]
rs996823	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832658	chr13:80486980-80680221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562417	chr13:80489814-80618915	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80498800-80510400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:80505400-80509200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:80505800-80510400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:80505800-80513400	Enhancers	HUVEC	blood vessel
5	chr13:80506600-80512200	Enhancers	Osteobl	bone
6	chr13:80506800-80511600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:80507400-80513600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:80508400-80512800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:80508600-80512600	Enhancers	NHDF-Ad	bronchial
10	chr13:80508800-80510200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:80508800-80510400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:80508800-80512400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:80508800-80512400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr13:80508800-80512600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr13:80509000-80509400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:80509000-80509600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr13:80509000-80512600	Enhancers	HMEC	breast
18	chr13:80509000-80514400	Enhancers	Cortex derived primary cultured neurospheres	brain

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