Variant report

Variant	rs3861143
Chromosome Location	chr13:80490602-80490603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11838566	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11840618	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11840648	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11840740	1.00[ASN][1000 genomes]
rs11841357	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11843138	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12323034	0.94[ASN][1000 genomes]
rs12323035	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12583025	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12583645	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12585712	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12853769	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12861375	0.99[ASN][1000 genomes]
rs12867413	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12868561	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12876835	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13378771	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1811362	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2007276	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2118798	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2304638	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2329003	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2329148	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34622893	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34710670	0.88[ASN][1000 genomes]
rs36063327	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3850061	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3850062	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3850064	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3861144	0.91[ASN][1000 genomes]
rs3898550	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3898551	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3916021	0.85[ASN][1000 genomes]
rs4052505	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4514565	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4533153	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4884141	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4884142	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4885683	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55978445	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57067871	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6563146	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6563150	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66994466	0.83[EUR][1000 genomes]
rs7318554	0.89[ASN][1000 genomes]
rs7329042	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7329614	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7330635	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7332417	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7333212	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7336725	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7982819	0.98[ASN][1000 genomes]
rs7994328	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7995887	0.90[ASN][1000 genomes]
rs7997147	0.99[ASN][1000 genomes]
rs9318660	0.84[ASN][1000 genomes]
rs9318662	0.91[ASN][1000 genomes]
rs9318663	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545261	0.90[ASN][1000 genomes]
rs9545268	0.96[ASN][1000 genomes]
rs9593417	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9593418	0.84[ASN][1000 genomes]
rs9593419	0.85[EUR][1000 genomes]
rs9593420	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9593421	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9601280	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9601281	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9601283	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9601285	0.84[EUR][1000 genomes]
rs9601286	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9601288	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9601289	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9601290	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9601291	0.88[ASN][1000 genomes]
rs9601293	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9601294	0.98[ASN][1000 genomes]
rs9805460	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs996823	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs996824	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv438256	chr13:80479404-80503110	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832658	chr13:80486980-80680221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562417	chr13:80489814-80618915	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80484400-80492200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr13:80485400-80492800	Weak transcription	Aorta	Aorta
3	chr13:80485400-80492800	Weak transcription	Brain Substantia Nigra	brain
4	chr13:80485600-80493400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr13:80487400-80493000	Weak transcription	HSMMtube	muscle
6	chr13:80488200-80492800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:80489200-80492200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr13:80489200-80492600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:80489800-80491800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:80489800-80491800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr13:80489800-80493000	Weak transcription	Fetal Muscle Leg	muscle
12	chr13:80490000-80493000	Weak transcription	Psoas Muscle	Psoas
13	chr13:80490400-80492000	Weak transcription	Fetal Lung	lung
14	chr13:80490400-80493000	Weak transcription	NHDF-Ad	bronchial
15	chr13:80490600-80491800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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