Variant report

Variant	rs11843138
Chromosome Location	chr13:80484424-80484425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11838566	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11840618	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11840648	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11840740	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11841357	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12323034	0.91[ASN][1000 genomes]
rs12323035	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12583025	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12583645	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12585712	0.82[EUR][1000 genomes]
rs12853769	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12861375	0.98[ASN][1000 genomes]
rs12867413	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12868561	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12876835	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13378771	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1811362	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2007276	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2118798	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2304638	0.96[ASN][1000 genomes]
rs2329003	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2329148	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34622893	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34710670	0.86[ASN][1000 genomes]
rs36063327	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3850061	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3850062	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3850064	0.91[EUR][1000 genomes]
rs3861143	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3861144	0.88[ASN][1000 genomes]
rs3898550	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3898551	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3916021	0.83[ASN][1000 genomes]
rs4052505	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4514565	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4533153	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4884141	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4884142	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4885683	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55978445	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57067871	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6563146	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6563150	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66994466	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7318554	0.86[ASN][1000 genomes]
rs7329042	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7329614	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7330635	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7332417	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7333212	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7336725	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7982819	0.95[ASN][1000 genomes]
rs7994328	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7995887	0.87[ASN][1000 genomes]
rs7997147	0.98[ASN][1000 genomes]
rs9318660	0.81[ASN][1000 genomes]
rs9318662	0.89[ASN][1000 genomes]
rs9318663	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9545261	0.88[ASN][1000 genomes]
rs9545268	0.94[ASN][1000 genomes]
rs9593417	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9593418	0.81[ASN][1000 genomes]
rs9593419	0.85[EUR][1000 genomes]
rs9593420	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9593421	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9601280	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9601281	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9601283	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9601285	0.86[EUR][1000 genomes]
rs9601286	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9601288	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9601289	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9601290	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9601291	0.87[ASN][1000 genomes]
rs9601293	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9601294	0.95[ASN][1000 genomes]
rs9805460	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs996823	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs996824	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv438256	chr13:80479404-80503110	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80476000-80484800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:80479800-80484800	Weak transcription	Brain Anterior Caudate	brain
3	chr13:80479800-80485000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:80479800-80489000	Weak transcription	Brain Angular Gyrus	brain
5	chr13:80480200-80485000	Weak transcription	Brain Substantia Nigra	brain
6	chr13:80482200-80485400	Enhancers	Fetal Lung	lung
7	chr13:80483400-80488800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr13:80483800-80485200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr13:80484200-80485600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:80484200-80486000	Enhancers	Fetal Brain Male	brain
11	chr13:80484400-80484600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:80484400-80484600	Enhancers	Psoas Muscle	Psoas
13	chr13:80484400-80485200	Enhancers	Fetal Brain Female	brain
14	chr13:80484400-80485600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr13:80484400-80485800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr13:80484400-80492200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links