Variant report

Variant	rs66994466
Chromosome Location	chr13:80568112-80568113
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10507901	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11838566	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11840618	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11840648	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841357	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11843138	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12323035	0.84[EUR][1000 genomes]
rs12583025	0.84[EUR][1000 genomes]
rs12583645	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12585712	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12853769	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12867413	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12868561	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12876835	0.84[EUR][1000 genomes]
rs1811362	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1837295	0.93[ASN][1000 genomes]
rs2007276	0.81[EUR][1000 genomes]
rs2118798	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2196781	0.88[ASN][1000 genomes]
rs2329003	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2329148	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34622893	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36063327	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3850061	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3850062	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3850064	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3861143	0.83[EUR][1000 genomes]
rs3861146	0.96[ASN][1000 genomes]
rs3898550	0.82[EUR][1000 genomes]
rs3898551	0.82[EUR][1000 genomes]
rs3966634	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4052505	0.86[EUR][1000 genomes]
rs4533153	0.81[EUR][1000 genomes]
rs4884141	0.81[EUR][1000 genomes]
rs4884142	0.82[EUR][1000 genomes]
rs4885683	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4885687	0.88[ASN][1000 genomes]
rs4885688	0.87[ASN][1000 genomes]
rs55978445	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57067871	0.82[EUR][1000 genomes]
rs6563150	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7329042	0.82[EUR][1000 genomes]
rs7329614	0.82[EUR][1000 genomes]
rs7330635	0.82[EUR][1000 genomes]
rs7332417	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7333430	0.92[ASN][1000 genomes]
rs7994328	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9318663	0.84[EUR][1000 genomes]
rs9531007	0.87[ASN][1000 genomes]
rs9531009	0.86[ASN][1000 genomes]
rs9545290	0.88[ASN][1000 genomes]
rs9545292	0.91[ASN][1000 genomes]
rs9545295	0.83[ASN][1000 genomes]
rs9593417	0.81[EUR][1000 genomes]
rs9593420	0.84[EUR][1000 genomes]
rs9593421	0.83[EUR][1000 genomes]
rs9601281	0.81[EUR][1000 genomes]
rs9601283	0.82[EUR][1000 genomes]
rs9601288	0.82[EUR][1000 genomes]
rs9601290	0.82[EUR][1000 genomes]
rs9601293	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832658	chr13:80486980-80680221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562417	chr13:80489814-80618915	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900591	chr13:80512487-80613204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900592	chr13:80512487-80715893	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80561400-80569000	Weak transcription	HSMM	muscle
2	chr13:80563800-80569000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:80563800-80569000	Weak transcription	HSMMtube	muscle
4	chr13:80563800-80569200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:80564000-80568400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr13:80564000-80569000	Weak transcription	NH-A	brain
7	chr13:80564200-80569000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:80564600-80569200	Weak transcription	NHLF	lung
9	chr13:80564800-80569000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:80564800-80569000	Weak transcription	HMEC	breast
11	chr13:80564800-80569200	Weak transcription	NHEK	skin
12	chr13:80565000-80568600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:80565000-80569000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr13:80565000-80569000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:80565000-80569200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:80565000-80569200	Weak transcription	Osteobl	bone
17	chr13:80565200-80568400	Weak transcription	NHDF-Ad	bronchial
18	chr13:80565200-80569000	Weak transcription	Hela-S3	cervix
19	chr13:80565200-80569200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:80565400-80569000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr13:80568000-80571800	Enhancers	Cortex derived primary cultured neurospheres	brain

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