Variant report

Variant	rs7333430
Chromosome Location	chr13:80576018-80576019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10507901	0.93[ASN][1000 genomes]
rs12585712	0.98[ASN][1000 genomes]
rs1837295	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1853995	0.90[EUR][1000 genomes]
rs2196781	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2329144	0.83[EUR][1000 genomes]
rs2329147	0.85[EUR][1000 genomes]
rs35409297	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3843950	0.83[EUR][1000 genomes]
rs3861146	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3966634	0.95[ASN][1000 genomes]
rs4290373	0.90[EUR][1000 genomes]
rs4306392	0.85[EUR][1000 genomes]
rs4885687	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4885688	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66994466	0.92[ASN][1000 genomes]
rs9531007	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9531009	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9545275	0.83[EUR][1000 genomes]
rs9545281	0.88[EUR][1000 genomes]
rs9545290	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9545292	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9545295	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9574522	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832658	chr13:80486980-80680221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562417	chr13:80489814-80618915	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900591	chr13:80512487-80613204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900592	chr13:80512487-80715893	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80570000-80585800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr13:80571400-80581800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:80573200-80585600	Weak transcription	Fetal Heart	heart
4	chr13:80574400-80576600	Enhancers	Fetal Brain Male	brain
5	chr13:80574400-80577200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:80574800-80577000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr13:80575000-80576200	Weak transcription	Brain Anterior Caudate	brain
8	chr13:80575000-80576600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:80575400-80576400	Enhancers	Brain Hippocampus Middle	brain
10	chr13:80575600-80576800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr13:80575600-80576800	Enhancers	Brain Cingulate Gyrus	brain
12	chr13:80575800-80576600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:80575800-80576800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:80575800-80576800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr13:80575800-80576800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr13:80576000-80576400	Enhancers	Brain Angular Gyrus	brain
17	chr13:80576000-80576400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr13:80576000-80576400	Enhancers	Brain Substantia Nigra	brain
19	chr13:80576000-80576600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:80576000-80576600	Weak transcription	NH-A	brain
21	chr13:80576000-80576800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:80576000-80576800	Enhancers	NHDF-Ad	bronchial

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