Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11838566	0.81[AMR][1000 genomes]
rs11840618	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11840648	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11841357	0.81[AMR][1000 genomes]
rs12585712	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12853769	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12867413	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12868561	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1837295	0.81[ASN][1000 genomes]
rs2118798	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2196781	0.86[ASN][1000 genomes]
rs2329148	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34622893	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3861146	0.83[ASN][1000 genomes]
rs3966634	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4885687	0.86[ASN][1000 genomes]
rs4885688	0.90[ASN][1000 genomes]
rs55978445	0.80[AMR][1000 genomes]
rs66994466	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7333430	0.93[ASN][1000 genomes]
rs7994328	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9531007	0.84[ASN][1000 genomes]
rs9531009	0.90[ASN][1000 genomes]
rs9545290	0.86[ASN][1000 genomes]
rs9545292	0.87[ASN][1000 genomes]
rs9545295	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832658	chr13:80486980-80680221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562417	chr13:80489814-80618915	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900591	chr13:80512487-80613204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900592	chr13:80512487-80715893	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80570000-80585800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr13:80571400-80581800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:80573200-80585600	Weak transcription	Fetal Heart	heart
4	chr13:80576400-80581800	Weak transcription	Brain Angular Gyrus	brain
5	chr13:80576400-80581800	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:80576400-80582000	Weak transcription	Brain Substantia Nigra	brain
7	chr13:80576400-80584600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:80576600-80582800	Weak transcription	Brain Anterior Caudate	brain
9	chr13:80576600-80583200	Weak transcription	Fetal Brain Male	brain
10	chr13:80576800-80581800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr13:80581000-80584400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr13:80581400-80584800	Enhancers	Cortex derived primary cultured neurospheres	brain

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