Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10507901	0.95[ASN][1000 genomes]
rs12585712	0.88[ASN][1000 genomes]
rs1837295	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1853995	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2196781	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2329144	0.86[AMR][1000 genomes]
rs2329147	0.85[AMR][1000 genomes]
rs35409297	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3843950	0.86[AMR][1000 genomes]
rs3861146	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3966634	0.87[ASN][1000 genomes]
rs4290373	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4306392	0.85[AMR][1000 genomes]
rs4885687	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4885688	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66994466	0.83[ASN][1000 genomes]
rs7317135	0.84[AMR][1000 genomes]
rs7333430	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9531007	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9531009	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9545275	0.86[AMR][1000 genomes]
rs9545281	0.86[AMR][1000 genomes]
rs9545290	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9545292	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9574522	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832658	chr13:80486980-80680221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562417	chr13:80489814-80618915	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900591	chr13:80512487-80613204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900592	chr13:80512487-80715893	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80570000-80585800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr13:80571400-80581800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:80573200-80585600	Weak transcription	Fetal Heart	heart
4	chr13:80576400-80581800	Weak transcription	Brain Angular Gyrus	brain
5	chr13:80576400-80581800	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:80576400-80582000	Weak transcription	Brain Substantia Nigra	brain
7	chr13:80576400-80584600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:80576600-80582800	Weak transcription	Brain Anterior Caudate	brain
9	chr13:80576600-80583200	Weak transcription	Fetal Brain Male	brain
10	chr13:80576800-80581800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr13:80577000-80581400	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: