Variant report

Variant	rs12585712
Chromosome Location	chr13:80572919-80572920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10507901	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11838566	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11840618	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11840648	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11841357	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11843138	0.82[EUR][1000 genomes]
rs12323035	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12583025	0.82[EUR][1000 genomes]
rs12583645	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12853769	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12867413	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12868561	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12876835	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1811362	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1837295	0.85[ASN][1000 genomes]
rs2118798	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2196781	0.81[ASN][1000 genomes]
rs2329003	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2329148	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34622893	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36063327	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3850061	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3850062	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3850064	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3861143	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3861146	0.88[ASN][1000 genomes]
rs3898550	0.80[EUR][1000 genomes]
rs3898551	0.80[EUR][1000 genomes]
rs3966634	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4052505	0.85[EUR][1000 genomes]
rs4884142	0.80[EUR][1000 genomes]
rs4885683	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4885687	0.81[ASN][1000 genomes]
rs4885688	0.93[ASN][1000 genomes]
rs55978445	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57067871	0.80[EUR][1000 genomes]
rs6563150	0.85[AMR][1000 genomes]
rs66994466	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7329042	0.80[EUR][1000 genomes]
rs7329614	0.80[EUR][1000 genomes]
rs7330635	0.80[EUR][1000 genomes]
rs7332417	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7333430	0.98[ASN][1000 genomes]
rs7994328	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9318663	0.82[EUR][1000 genomes]
rs9531009	0.93[ASN][1000 genomes]
rs9545290	0.81[ASN][1000 genomes]
rs9545292	0.92[ASN][1000 genomes]
rs9545295	0.88[ASN][1000 genomes]
rs9593420	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9593421	0.82[EUR][1000 genomes]
rs9601283	0.80[EUR][1000 genomes]
rs9601288	0.80[EUR][1000 genomes]
rs9601290	0.80[EUR][1000 genomes]
rs9601293	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832658	chr13:80486980-80680221	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562417	chr13:80489814-80618915	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900591	chr13:80512487-80613204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900592	chr13:80512487-80715893	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80569400-80575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80570000-80574600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:80570000-80574600	Weak transcription	NHLF	lung
4	chr13:80570000-80575000	Weak transcription	HUVEC	blood vessel
5	chr13:80570000-80576000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:80570000-80585800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:80570200-80575000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:80570200-80576000	Weak transcription	NHDF-Ad	bronchial
9	chr13:80571400-80581800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:80571800-80574800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr13:80572400-80573000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr13:80572400-80573200	Enhancers	Fetal Heart	heart
13	chr13:80572600-80573000	Enhancers	Brain Substantia Nigra	brain

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